[
  {
    "identifier": "NGENCGR7YUSDNR",
    "data_source": "ENCODE",
    "file_name": "ENCFF685VRG.bed.gz",
    "number_of_intervals": 66709,
    "bp_covered": 35664116,
    "output_type": "conservative IDR thresholded peaks",
    "genome_build": "hg38",
    "cell_type": "Brain",
    "biosample_type": "Organoid",
    "biosample_term_id": "UBERON:0000955",
    "tissue_category": "Brain",
    "encode_experiment_id": "ENCSR930SOT",
    "biological_replicate": "1, 2",
    "technical_replicate": "1_1, 1_2, 2_1, 2_2",
    "antibody": "CTCF",
    "assay": "TF ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 1164951,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2",
    "downloaded_date": "06/12/2022",
    "release_date": "07/09/2020",
    "date_added_to_filer": "08/21/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF685VRG.bed.gz",
    "processed_file_md5": "97feb92e0b2a05999f0c122ad08fd6b3",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF685VRG.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF685VRG/@@download/ENCFF685VRG.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF685VRG.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "a589aaed64a87812f82a102e25c5079d",
    "data_category": "TF ChIP-seq peaks",
    "classification": "TF ChIP-seq CTCF conservative IDR thresholded peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens brain organoid, 30 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE175328;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-04-13,2020-07-06;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no",
    "system_category": "Nervous",
    "life_stage": "Embryonic",
    "track_name": "ENCODE Brain (repl. 1, 2) TF ChIP-seq CTCF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR930SOT] [Life stage: Embryonic] [TF ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF685VRG.bed.gz.tbi"
  }
]