[
  {
    "identifier": "NGENCH2I2M5I7B",
    "data_source": "ENCODE",
    "file_name": "ENCFF507YSF.bed.gz",
    "number_of_intervals": 43070,
    "bp_covered": 12439643,
    "output_type": "IDR thresholded peaks",
    "genome_build": "hg38",
    "cell_type": "Smooth muscle cell",
    "biosample_type": "In vitro differentiated cells",
    "biosample_term_id": "CL:0000192",
    "tissue_category": "Muscle",
    "encode_experiment_id": "ENCSR261VAS",
    "biological_replicate": 2,
    "technical_replicate": "2_1",
    "antibody": "CTCF",
    "assay": "TF ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 751679,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2",
    "downloaded_date": "06/12/2022",
    "release_date": "10/26/2020",
    "date_added_to_filer": "08/21/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF507YSF.bed.gz",
    "processed_file_md5": "3890c5d69734c8376817877e2abc43c6",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF507YSF.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF507YSF/@@download/ENCFF507YSF.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF507YSF.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "2011eddf8af404d5cbd22644d3de4e4d",
    "data_category": "TF ChIP-seq peaks",
    "classification": "TF ChIP-seq CTCF IDR thresholded peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens smooth muscle cell originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,SESCC,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2;Life_stage_age=embryonic 5 days;Reference=PMCID:PMC7343189;External_resources=GEO:GSE175142,SCREEN-GRCh38:smooth_muscle_cell_originated_from_H9,FactorBook:ENCSR261VAS;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-12-03,2016-04-27;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=smooth muscle cell;ENCODE_cell_slims=smooth muscle cell;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=SMCs,smooth muscle fiber,myocytes, smooth muscle;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000192;is_hg38_lifted=no",
    "system_category": "Muscular",
    "life_stage": "Embryonic",
    "track_name": "ENCODE Smooth muscle cell (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR261VAS] [Life stage: Embryonic] [TF ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF507YSF.bed.gz.tbi"
  }
]