[
  {
    "identifier": "NGENCHPTMNDT2D",
    "data_source": "ENCODE",
    "file_name": "ENCFF087HDW.bed.gz",
    "number_of_intervals": 178135,
    "bp_covered": 121884852,
    "output_type": "pseudoreplicated peaks",
    "genome_build": "hg38",
    "cell_type": "Epithelial cell",
    "biosample_type": "Primary cell",
    "biosample_term_id": "CL:0000066",
    "tissue_category": "Breast",
    "encode_experiment_id": "ENCSR521FND",
    "biological_replicate": 1,
    "technical_replicate": "1_1, 1_2",
    "antibody": "H3K4me1",
    "assay": "Histone ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 4225234,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1",
    "downloaded_date": "06/12/2022",
    "release_date": "01/30/2021",
    "date_added_to_filer": "08/22/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF087HDW.bed.gz",
    "processed_file_md5": "b73fa9265c8edce4cf56f135a7a6e9a4",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF087HDW.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF087HDW/@@download/ENCFF087HDW.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF087HDW.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "46177bd41a974425717508f39972cc6b",
    "data_category": "Histone ChIP-seq peaks",
    "classification": "Histone ChIP-seq H3K4me1 pseudoreplicated peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens mammary epithelial cell female adult (18 years);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=adult 18 years;Reference=PMID:32728046;External_resources=GEO:GSM613876,GEO:GSM613868;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mammary epithelial cell;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=exocrine system,integumental system;ENCODE_biosample_term_synonyms=mammary epithelial cell,breast epithelial cell;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002327;is_hg38_lifted=no;narrowPeak_filter=qValueLog10",
    "system_category": "Reproductive",
    "life_stage": "Adult",
    "track_name": "ENCODE Epithelial cell (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR521FND] [Life stage: Adult] [Histone ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF087HDW.bed.gz.tbi"
  }
]