[
  {
    "identifier": "NGENCIMRLNRX33",
    "data_source": "ENCODE",
    "file_name": "ENCFF379SVG.bed.gz",
    "number_of_intervals": 459410,
    "bp_covered": 183836723,
    "output_type": "peaks",
    "genome_build": "hg38",
    "cell_type": "SK-N-SH",
    "biosample_type": "Cell line",
    "biosample_term_id": "EFO:0003072",
    "tissue_category": "Brain",
    "encode_experiment_id": "ENCSR514HBO",
    "biological_replicate": 1,
    "technical_replicate": "1_1",
    "antibody": "CTCF",
    "assay": "ChIA-PET",
    "file_format": "bed narrowPeak",
    "file_size": 10624211,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38",
    "downloaded_date": "06/12/2022",
    "release_date": "10/08/2020",
    "date_added_to_filer": "08/22/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF379SVG.bed.gz",
    "processed_file_md5": "2de882fc4e75c92b84177629f4b3053f",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF379SVG.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF379SVG/@@download/ENCFF379SVG.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF379SVG.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "ae5da281d7993154e1e18acdc4016fbd",
    "data_category": "Chromatin interactions",
    "classification": "ChIA-PET CTCF peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens SK-N-SH;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSE177127;Project=ENCODE;Award=UM1HG009409;Experiment_date_released=2021-01-25;Submitted_track_name=LHS0001H.no_input_all_peaks.maxscore1000.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no;narrowPeak_filter=qValueLog10",
    "system_category": "Nervous",
    "life_stage": "Child",
    "track_name": "ENCODE SK-N-SH (repl. 1) ChIA-PET CTCF peaks (narrowPeak) [Experiment: ENCSR514HBO] [Life stage: Child] [Chromatin interactions]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF379SVG.bed.gz.tbi"
  }
]