[
  {
    "identifier": "NGENCK4K2VHOJY",
    "data_source": "ENCODE",
    "file_name": "ENCFF648AVZ.bed.gz",
    "number_of_intervals": 2846,
    "bp_covered": 709119,
    "output_type": "IDR thresholded peaks",
    "genome_build": "hg38",
    "cell_type": "SK-N-SH",
    "biosample_type": "Cell line",
    "biosample_term_id": "EFO:0003072",
    "tissue_category": "Brain",
    "encode_experiment_id": "ENCSR507BWM",
    "biological_replicate": 1,
    "technical_replicate": "1_1",
    "antibody": "GLIS3",
    "assay": "TF ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 57325,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2",
    "downloaded_date": "06/12/2022",
    "release_date": "06/29/2020",
    "date_added_to_filer": "08/21/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF648AVZ.bed.gz",
    "processed_file_md5": "97a0d0f9e70420be064221fb9bf5e9ef",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF648AVZ.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF648AVZ/@@download/ENCFF648AVZ.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF648AVZ.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "1fa185c248881e1204eb32e5905d45c8",
    "data_category": "TF ChIP-seq peaks",
    "classification": "TF ChIP-seq IDR thresholded peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens GLIS3 treated with 6 _M all-trans-retinoic acid for 48 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSE175314;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-06-30,2021-07-14;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no",
    "system_category": "Nervous",
    "life_stage": "Child",
    "track_name": "ENCODE SK-N-SH (repl. 1) TF ChIP-seq GLIS3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR507BWM] [Life stage: Child] [TF ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF648AVZ.bed.gz.tbi"
  }
]