[
  {
    "identifier": "NGENCNPFSUTRJ6",
    "data_source": "ENCODE",
    "file_name": "ENCFF257TRY.bed.gz",
    "number_of_intervals": 40311,
    "bp_covered": 14102179,
    "output_type": "pseudoreplicated peaks",
    "genome_build": "hg38",
    "cell_type": "Mesenchymal stem cell",
    "biosample_type": "Stem cell",
    "biosample_term_id": "CL:0000134",
    "tissue_category": "Connective Tissue",
    "encode_experiment_id": "ENCSR526NKM",
    "biological_replicate": 1,
    "technical_replicate": "1_1",
    "antibody": "H2AFZ",
    "assay": "Histone ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 889877,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1",
    "downloaded_date": "06/12/2022",
    "release_date": "12/04/2020",
    "date_added_to_filer": "08/22/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF257TRY.bed.gz",
    "processed_file_md5": "45f0bec7a93963fea99bd26c7ece77e2",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF257TRY.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF257TRY/@@download/ENCFF257TRY.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF257TRY.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "37a05b63224cb439fac279b3f7122403",
    "data_category": "Histone ChIP-seq peaks",
    "classification": "Histone ChIP-seq H2AFZ pseudoreplicated peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens mesenchymal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM818009;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mesenchymal stem cell;ENCODE_cell_slims=stem cell,connective tissue cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000134;is_hg38_lifted=no;narrowPeak_filter=qValueLog10",
    "system_category": "Skeletal",
    "life_stage": "Embryonic",
    "track_name": "ENCODE Mesenchymal stem cell (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR526NKM] [Life stage: Embryonic] [Histone ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF257TRY.bed.gz.tbi"
  }
]