[
  {
    "identifier": "NGENCQ7EW7L6RD",
    "data_source": "ENCODE",
    "file_name": "ENCFF042YTM.bed.gz",
    "number_of_intervals": 45688,
    "bp_covered": 53414792,
    "output_type": "pseudoreplicated peaks",
    "genome_build": "hg38",
    "cell_type": "Hepatocyte",
    "biosample_type": "In vitro differentiated cells",
    "biosample_term_id": "CL:0000182",
    "tissue_category": "Liver",
    "encode_experiment_id": "ENCSR637RLN",
    "biological_replicate": 1,
    "technical_replicate": "1_1, 1_2",
    "antibody": "H3K27me3",
    "assay": "Histone ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 1001573,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1",
    "downloaded_date": "06/12/2022",
    "release_date": "11/13/2020",
    "date_added_to_filer": "08/22/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF042YTM.bed.gz",
    "processed_file_md5": "3153bf8151b0d0a5ee5489e2098291e0",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF042YTM.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF042YTM/@@download/ENCFF042YTM.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF042YTM.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "08e862cf393850ba93b3dff8e8aef431",
    "data_category": "Histone ChIP-seq peaks",
    "classification": "Histone ChIP-seq H3K27me3 pseudoreplicated peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens hepatocyte originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,SESCC,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE96280;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-20,2016-04-27;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=hepatocyte;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000182;is_hg38_lifted=no;narrowPeak_filter=qValueLog10",
    "system_category": "Digestive",
    "life_stage": "Embryonic",
    "track_name": "ENCODE Hepatocyte (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR637RLN] [Life stage: Embryonic] [Histone ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF042YTM.bed.gz.tbi"
  }
]