[
  {
    "identifier": "NGENCQIK74OGB2",
    "data_source": "ENCODE",
    "file_name": "ENCFF353JBO.bed.gz",
    "number_of_intervals": 601,
    "bp_covered": 156653,
    "output_type": "IDR thresholded peaks",
    "genome_build": "hg38",
    "cell_type": "WTC11",
    "biosample_type": "Cell line",
    "biosample_term_id": "EFO:0009747",
    "tissue_category": "Skin",
    "encode_experiment_id": "ENCSR027BEE",
    "biological_replicate": 1,
    "technical_replicate": "1_1",
    "antibody": "CDX4",
    "assay": "TF ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 12575,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1",
    "downloaded_date": "06/12/2022",
    "release_date": "09/01/2021",
    "date_added_to_filer": "08/21/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF353JBO.bed.gz",
    "processed_file_md5": "35f3936d73c3d955a85e59d530ee603c",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF353JBO.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF353JBO/@@download/ENCFF353JBO.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF353JBO.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "3fd43c8c4a53f24993737c6b6ae9e4f8",
    "data_category": "TF ChIP-seq peaks",
    "classification": "TF ChIP-seq IDR thresholded peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens CDX4;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE187141;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-09-02,2021-05-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.9.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no",
    "system_category": "Integumentary",
    "life_stage": "Adult",
    "track_name": "ENCODE WTC11 (repl. 1) TF ChIP-seq CDX4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR027BEE] [Life stage: Adult] [TF ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF353JBO.bed.gz.tbi"
  }
]