[
  {
    "identifier": "NGENCTJMGJWY4T",
    "data_source": "ENCODE",
    "file_name": "ENCFF945YMA.bed.gz",
    "number_of_intervals": 29870,
    "bp_covered": 72940127,
    "output_type": "replicated peaks",
    "genome_build": "hg38",
    "cell_type": "Neural progenitor cell",
    "biosample_type": "In vitro differentiated cells",
    "biosample_term_id": "CL:0011020",
    "tissue_category": "Brain",
    "encode_experiment_id": "ENCSR139PIA",
    "biological_replicate": "1, 2",
    "technical_replicate": "1_1, 1_2, 2_1",
    "antibody": "H3K27me3",
    "assay": "Histone ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 788128,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1",
    "downloaded_date": "06/12/2022",
    "release_date": "11/13/2020",
    "date_added_to_filer": "08/22/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF945YMA.bed.gz",
    "processed_file_md5": "ab44a8a4ea37fbe0dc1f090a891da3d5",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF945YMA.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF945YMA/@@download/ENCFF945YMA.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF945YMA.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "7934f55f0a5dcb0dfda2829113d7d9f8",
    "data_category": "Histone ChIP-seq peaks",
    "classification": "Histone ChIP-seq H3K27me3 replicated peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens neural progenitor cell originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,SESCC,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE95944;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-06-14,2016-05-26;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neural progenitor cell;ENCODE_cell_slims=progenitor cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0011020;is_hg38_lifted=no;narrowPeak_filter=qValueLog10",
    "system_category": "Nervous",
    "life_stage": "Embryonic",
    "track_name": "ENCODE Neural progenitor cell (repl. 1, 2) Histone ChIP-seq H3K27me3 replicated peaks (narrowPeak) [Experiment: ENCSR139PIA] [Life stage: Embryonic] [Histone ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF945YMA.bed.gz.tbi"
  }
]