[
  {
    "identifier": "NGENCWBF7S5IDP",
    "data_source": "ENCODE",
    "file_name": "ENCFF561CGK.bed.gz",
    "number_of_intervals": 123146,
    "bp_covered": 121826477,
    "output_type": "pseudoreplicated peaks",
    "genome_build": "hg38",
    "cell_type": "Germinal matrix",
    "biosample_type": "Tissue",
    "biosample_term_id": "Not available",
    "tissue_category": "Brain",
    "encode_experiment_id": "ENCSR690UYB",
    "biological_replicate": 1,
    "technical_replicate": "1_1",
    "antibody": "H3K36me3",
    "assay": "Histone ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 2450772,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1",
    "downloaded_date": "06/12/2022",
    "release_date": "01/30/2021",
    "date_added_to_filer": "08/22/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF561CGK.bed.gz",
    "processed_file_md5": "4ab8f72011c1095b201c9f25f39e3a92",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF561CGK.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF561CGK/@@download/ENCFF561CGK.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF561CGK.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "0eb35c63e5340afa3d26cdf7344ba0c1",
    "data_category": "Histone ChIP-seq peaks",
    "classification": "Histone ChIP-seq H3K36me3 pseudoreplicated peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens germinal matrix tissue male embryo (20 weeks);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=embryonic 20 weeks;Reference=PMID:32728046;External_resources=GEO:GSM707002;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=germinal matrix;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0001407;is_hg38_lifted=no;narrowPeak_filter=qValueLog10",
    "system_category": "Nervous",
    "life_stage": "Embryonic",
    "track_name": "ENCODE Germinal matrix (repl. 1) Histone ChIP-seq H3K36me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR690UYB] [Life stage: Embryonic] [Histone ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF561CGK.bed.gz.tbi"
  }
]