[
  {
    "identifier": "NGENCXVYP6VIUB",
    "data_source": "ENCODE",
    "file_name": "ENCFF319RUN.bed.gz",
    "number_of_intervals": 33162,
    "bp_covered": 13657517,
    "output_type": "IDR thresholded peaks",
    "genome_build": "hg38",
    "cell_type": "Mucosa",
    "biosample_type": "Tissue",
    "biosample_term_id": "UBERON:0000344",
    "tissue_category": "Digestive",
    "encode_experiment_id": "ENCSR380WJL",
    "biological_replicate": 1,
    "technical_replicate": "1_1, 1_2",
    "antibody": "CTCF",
    "assay": "TF ChIP-seq",
    "file_format": "bed narrowPeak",
    "file_size": 563694,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1",
    "downloaded_date": "06/12/2022",
    "release_date": "06/23/2021",
    "date_added_to_filer": "08/21/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF319RUN.bed.gz",
    "processed_file_md5": "e27f3a5d1bf1f444133cfac9b6593550",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF319RUN.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/",
    "link_out_url": "https://www.encodeproject.org",
    "raw_file_url": "https://www.encodeproject.org/files/ENCFF319RUN/@@download/ENCFF319RUN.bigBed",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF319RUN.bigBed -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/ENCODE/",
    "raw_file_md5": "12272220a57b489efb7453d0cb4756a2",
    "data_category": "TF ChIP-seq peaks",
    "classification": "TF ChIP-seq CTCF IDR thresholded peaks",
    "track_description": "version=2024;Biosample_summary=Homo sapiens colonic mucosa tissue female adult (41 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 41 years;Reference=NR;External_resources=GEO:GSE209074;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-02-04,2021-06-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=colonic mucosa;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=mucosa of large bowel,colon mucous membrane,mucosa of colon,colonic mucous membrane,colonic mucosa,colon mucosa,large bowel mucosa;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000317;is_hg38_lifted=no",
    "system_category": "Digestive",
    "life_stage": "Adult",
    "track_name": "ENCODE Mucosa (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR380WJL] [Life stage: Adult] [TF ChIP-seq peaks]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF319RUN.bed.gz.tbi"
  }
]