[
  {
    "identifier": "NGEPM33PFSGW3U",
    "data_source": "EpiMap",
    "file_name": "formatted_output_BSS01344_ENCODE_2012_All_hg38.bed.gz",
    "number_of_intervals": 568863,
    "bp_covered": 2820428400,
    "output_type": "chromatin states",
    "genome_build": "hg38",
    "cell_type": "Myotube",
    "biosample_type": "In vitro differentiated cells",
    "biosample_term_id": "CL:0002372",
    "tissue_category": "Skeletal Muscle",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "consolidated",
    "assay": "ChromHMM",
    "file_format": "bed bed9",
    "file_size": 5536195,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38",
    "downloaded_date": "10/22/2021",
    "release_date": "02/19/2021",
    "date_added_to_filer": "05/20/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01344_ENCODE_2012_All_hg38.bed.gz",
    "processed_file_md5": "bf22457ae04bc7b0bf5959f302f28590",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01344_ENCODE_2012_All_hg38.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/",
    "link_out_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/",
    "raw_file_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01344_18_CALLS_segments.bed.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01344_18_CALLS_segments.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01344_18_CALLS_segments.bed.gz",
    "raw_file_md5": "22005b285d2064ad9b27042f744f0929",
    "data_category": "Chromatin states",
    "classification": "ChromHMM consolidated chromatin states",
    "track_description": "version=2021;Original_cell_type=myotube originated from skeletal muscle myoblast;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01344;extended_md.donor.ids=ENCDO341XKY,ENCDO094AAA;extended_md.collated.donors=ENCDO341XKY,ENCDO094AAA;extended_md.accession=ENCSR000ANU,ENCSR000ANV,ENCSR000ANW,ENCSR000ANX,ENCSR000EOP,ENCSR000ANY,ENCSR000ANZ,ENCSR000AOY,ENCSR000AOZ,ENCSR000AON,ENCSR000ATI,ENCSR000AQM;extended_md.biosample.ids=ENCBS276EMT,ENCBS276EMT,ENCBS526ENC,ENCBS639UHS,ENCBS236AFP,ENCBS639UHS;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=unknown,adult;extended_md.age=unknown,22;extended_md.age.units=NR,year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no",
    "system_category": "Muscular",
    "life_stage": "Adult, Unknown",
    "track_name": "EpiMap Myotube ChromHMM consolidated chromatin states (bed9) [Chromatin states]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01344_ENCODE_2012_All_hg38.bed.gz.tbi"
  }
]