[
  {
    "identifier": "NGEPM34JBUQHTH",
    "data_source": "EpiMap",
    "file_name": "formatted_output_BSS01850_ENCODE_All_hg38.bed.gz",
    "number_of_intervals": 314517,
    "bp_covered": 2820428400,
    "output_type": "chromatin states",
    "genome_build": "hg38",
    "cell_type": "Transverse colon",
    "biosample_type": "Tissue",
    "biosample_term_id": "UBERON:0001157",
    "tissue_category": "Digestive",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "consolidated",
    "assay": "ChromHMM",
    "file_format": "bed bed9",
    "file_size": 3053472,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38",
    "downloaded_date": "10/22/2021",
    "release_date": "02/19/2021",
    "date_added_to_filer": "05/20/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01850_ENCODE_All_hg38.bed.gz",
    "processed_file_md5": "b2c21831bb2be4225d1631a8316a0b90",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01850_ENCODE_All_hg38.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/",
    "link_out_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/",
    "raw_file_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01850_18_CALLS_segments.bed.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01850_18_CALLS_segments.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01850_18_CALLS_segments.bed.gz",
    "raw_file_md5": "5f222118664d242367f62df67c1e0653",
    "data_category": "Chromatin states",
    "classification": "ChromHMM consolidated chromatin states",
    "track_description": "version=2021;Original_cell_type=transverse colon male adult (37 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01850;extended_md.donor.ids=ENCDO845WKR;extended_md.collated.donors=ENCDO845WKR;extended_md.accession=ENCSR668VCT,ENCSR643KID,ENCSR813ZEY,ENCSR083DXD,ENCSR640XRV,ENCSR979ZJS,ENCSR749ABB;extended_md.biosample.ids=ENCBS816BKF,ENCBS572ESP,ENCBS174MRL;extended_md.assay=ChIP-seq,ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=37;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no",
    "system_category": "Digestive",
    "life_stage": "Adult",
    "track_name": "EpiMap Transverse colon ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01850_ENCODE_All_hg38.bed.gz.tbi"
  }
]