[
  {
    "identifier": "NGEPM5ISGU35KL",
    "data_source": "EpiMap",
    "file_name": "formatted_output_BSS01156_ENCODE_All_hg38.bed.gz",
    "number_of_intervals": 253771,
    "bp_covered": 2820428400,
    "output_type": "chromatin states",
    "genome_build": "hg38",
    "cell_type": "Limb",
    "biosample_type": "Tissue",
    "biosample_term_id": "UBERON:0002101",
    "tissue_category": "Embryo",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "consolidated",
    "assay": "ChromHMM",
    "file_format": "bed bed9",
    "file_size": 2497065,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38",
    "downloaded_date": "10/22/2021",
    "release_date": "02/19/2021",
    "date_added_to_filer": "05/20/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01156_ENCODE_All_hg38.bed.gz",
    "processed_file_md5": "9cace2ab60bdd59b09d3726e09882c40",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01156_ENCODE_All_hg38.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/",
    "link_out_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/",
    "raw_file_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01156_18_CALLS_segments.bed.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01156_18_CALLS_segments.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01156_18_CALLS_segments.bed.gz",
    "raw_file_md5": "d7f9a0cc66c38c1db74d0762cd4aeea0",
    "data_category": "Chromatin states",
    "classification": "ChromHMM consolidated chromatin states",
    "track_description": "version=2021;Original_cell_type=limb embryo (53 days) and embryo (56 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01156;extended_md.donor.ids=ENCDO114CJX,ENCDO870GPO,ENCDO733WDT;extended_md.collated.donors=ENCDO114CJX,ENCDO870GPO,ENCDO733WDT;extended_md.accession=ENCSR818JGZ;extended_md.biosample.ids=ENCBS845CJS,ENCBS930THP,ENCBS254AOS;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=53,56;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0002101;is_hg38_lifted=no",
    "system_category": "Embryo",
    "life_stage": "Embryonic",
    "track_name": "EpiMap Limb ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01156_ENCODE_All_hg38.bed.gz.tbi"
  }
]