[
  {
    "identifier": "NGEPMAWXB4CSGT",
    "data_source": "EpiMap_Enhancers",
    "file_name": "formatted_output_BSS01263_Roadmap_2015_Enh_hg38.bed.gz",
    "number_of_intervals": 127547,
    "bp_covered": 73185400,
    "output_type": "enhancer chromatin states",
    "genome_build": "hg38",
    "cell_type": "Mesendoderm",
    "biosample_type": "In vitro differentiated cells",
    "biosample_term_id": "BTO:0003953",
    "tissue_category": "Embryo",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "consolidated",
    "assay": "ChromHMM",
    "file_format": "bed bed9",
    "file_size": 1187145,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38",
    "downloaded_date": "10/22/2021",
    "release_date": "02/19/2021",
    "date_added_to_filer": "05/20/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01263_Roadmap_2015_Enh_hg38.bed.gz",
    "processed_file_md5": "a9dd40d09da47e4b67952cf53b7fc6e0",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01263_Roadmap_2015_Enh_hg38.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/",
    "link_out_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/",
    "raw_file_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01263_18_CALLS_segments.bed.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01263_18_CALLS_segments.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01263_18_CALLS_segments.bed.gz",
    "raw_file_md5": "79e72ad4c896f1b9544954f144fdccf1",
    "data_category": "Enhancer",
    "classification": "ChromHMM consolidated enhancer chromatin states",
    "track_description": "version=2021;Original_cell_type=mesendoderm originated from H1-hESC;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01263;extended_md.donor.ids=ENCDO000AAW;extended_md.collated.donors=ENCDO000AAW;extended_md.accession=ENCSR598UDU,ENCSR297AUZ,ENCSR405AXO,ENCSR035BZI,ENCSR126BGU,ENCSR327JOJ,ENCSR565XTT,ENCSR714DIF,ENCSR473AQI,ENCSR357HAN,ENCSR839PUY,ENCSR721MPV,ENCSR664KWY,ENCSR473PNT,ENCSR441SAT,ENCSR575ZNE,ENCSR036NSK,ENCSR144RXL,ENCSR900EUT,ENCSR814MAF;extended_md.biosample.ids=ENCBS084NIJ,ENCBS084NIJ,ENCBS328FFG,ENCBS573WAE,ENCBS004CWA,ENCBS084NIJ,ENCBS573WAE,ENCBS573WAE,ENCBS004CWA,ENCBS328FFG;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=NTR:0000856;is_hg38_lifted=no",
    "system_category": "Embryo",
    "life_stage": "Embryonic",
    "track_name": "EpiMap_Enhancers Mesendoderm ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01263_Roadmap_2015_Enh_hg38.bed.gz.tbi"
  }
]