[
  {
    "identifier": "NGEPMBDXRKFFX2",
    "data_source": "EpiMap",
    "file_name": "formatted_output_BSS01346_Roadmap_2015_All_hg38.bed.gz",
    "number_of_intervals": 378416,
    "bp_covered": 2820428400,
    "output_type": "chromatin states",
    "genome_build": "hg38",
    "cell_type": "Naive CD4 alpha-beta T cell",
    "biosample_type": "Primary cell",
    "biosample_term_id": "CL:0000895",
    "tissue_category": "Blood",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "consolidated",
    "assay": "ChromHMM",
    "file_format": "bed bed9",
    "file_size": 3671717,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38",
    "downloaded_date": "10/22/2021",
    "release_date": "02/19/2021",
    "date_added_to_filer": "05/20/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01346_Roadmap_2015_All_hg38.bed.gz",
    "processed_file_md5": "6d6d39cbe705de944f005d7f0f05b0d4",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01346_Roadmap_2015_All_hg38.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/",
    "link_out_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/",
    "raw_file_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01346_18_CALLS_segments.bed.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01346_18_CALLS_segments.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01346_18_CALLS_segments.bed.gz",
    "raw_file_md5": "c7e4b3dec5ae8d46186198c5b87e36cd",
    "data_category": "Chromatin states",
    "classification": "ChromHMM consolidated chromatin states",
    "track_description": "version=2021;Original_cell_type=naive thymus-derived CD4+alpha-beta T cell;tissue_of_origin=Thymus;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01346;extended_md.donor.ids=ENCDO922CEJ,ENCDO922CEJ,ENCDO688UWB,ENCDO173AAA,ENCDO688UWB,ENCDO194EHQ,ENCDO922CEJ,ENCDO779YRY,ENCDO688UWB,ENCDO194EHQ;extended_md.collated.donors=ENCDO922CEJ,ENCDO779YRY,ENCDO194EHQ,ENCDO688UWB,ENCDO173AAA,ENCDO194EHQ;extended_md.accession=ENCSR218HDF,ENCSR716CWA,ENCSR657SQM,ENCSR430ULY,ENCSR605SXJ,ENCSR000EIF,ENCSR276ZSL,ENCSR351SZH,ENCSR485URZ,ENCSR198YHG,ENCSR637IOH,ENCSR120WKZ,ENCSR161XBV,ENCSR229QYR,ENCSR224LFY,ENCSR674VPA,ENCSR098ALO;extended_md.biosample.ids=ENCBS802IAU,ENCBS213TZD,ENCBS689NPQ,ENCBS213TZD,ENCBS271AAA,ENCBS689NPQ,ENCBS802IAU,ENCBS176CYD,ENCBS802IAU,ENCBS213TZD;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no",
    "system_category": "Cardiovascular",
    "life_stage": "Unknown",
    "track_name": "EpiMap Naive CD4 alpha-beta T cell ChromHMM consolidated chromatin states (bed9) [Chromatin states]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01346_Roadmap_2015_All_hg38.bed.gz.tbi"
  }
]