[
  {
    "identifier": "NGEPMBGK7MVCHK",
    "data_source": "EpiMap_Enhancers",
    "file_name": "formatted_output_BSS00296_ENCODE_2012_Enh_hg38.bed.gz",
    "number_of_intervals": 152361,
    "bp_covered": 115339800,
    "output_type": "enhancer chromatin states",
    "genome_build": "hg38",
    "cell_type": "Endothelial cell",
    "biosample_type": "Primary cell",
    "biosample_term_id": "CL:0000115",
    "tissue_category": "Umbilical Cord",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "consolidated",
    "assay": "ChromHMM",
    "file_format": "bed bed9",
    "file_size": 1418314,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38",
    "downloaded_date": "10/22/2021",
    "release_date": "02/19/2021",
    "date_added_to_filer": "05/20/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00296_ENCODE_2012_Enh_hg38.bed.gz",
    "processed_file_md5": "31a14f8b8bcdcae8d84194d309bff9a8",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00296_ENCODE_2012_Enh_hg38.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/",
    "link_out_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/",
    "raw_file_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00296_18_CALLS_segments.bed.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00296_18_CALLS_segments.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00296_18_CALLS_segments.bed.gz",
    "raw_file_md5": "d67c38d2fc4dd2151260873e33b2fdd0",
    "data_category": "Enhancer",
    "classification": "ChromHMM consolidated enhancer chromatin states",
    "track_description": "version=2021;Original_cell_type=endothelial cell of umbilical vein male newborn;tissue_of_origin=Umbilical vein;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00296;extended_md.donor.ids=ENCDO342AAA,ENCDO551FXN;extended_md.collated.donors=ENCDO342AAA,ENCDO551FXN;extended_md.accession=ENCSR000ASC,ENCSR000AKK,ENCSR000ATB,ENCSR000AKL,ENCSR000ASD,ENCSR000AKM,ENCSR000DVM,ENCSR000DVN,ENCSR000AKN,ENCSR000DVO,ENCSR000ALB,ENCSR000ALC,ENCSR000ALD,ENCSR000ALE,ENCSR000ALF,ENCSR578QSO;extended_md.biosample.ids=ENCBS500EJQ,ENCBS717AAA,ENCBS741UNQ,ENCBS859WPH,ENCBS461LFN,ENCBS717AAA,ENCBS834QWR,ENCBS723CDM;extended_md.assay=ChIP-seq;extended_md.life.stage=newborn;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no",
    "system_category": "Embryo",
    "life_stage": "Newborn",
    "track_name": "EpiMap_Enhancers Endothelial cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Newborn] [Enhancer]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00296_ENCODE_2012_Enh_hg38.bed.gz.tbi"
  }
]