[
  {
    "identifier": "NGEPMBKM2SKYDY",
    "data_source": "EpiMap_Enhancers",
    "file_name": "formatted_output_BSS01261_Roadmap_2015_Enh_hg38.bed.gz",
    "number_of_intervals": 213183,
    "bp_covered": 156855000,
    "output_type": "enhancer chromatin states",
    "genome_build": "hg38",
    "cell_type": "Mesenchymal stem cell",
    "biosample_type": "Stem cell",
    "biosample_term_id": "CL:0000134",
    "tissue_category": "Connective Tissue",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "consolidated",
    "assay": "ChromHMM",
    "file_format": "bed bed9",
    "file_size": 2001912,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38",
    "downloaded_date": "10/22/2021",
    "release_date": "02/19/2021",
    "date_added_to_filer": "05/20/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01261_Roadmap_2015_Enh_hg38.bed.gz",
    "processed_file_md5": "55d96ac5027b24a7797e4bd7bcea559c",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01261_Roadmap_2015_Enh_hg38.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/",
    "link_out_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/",
    "raw_file_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01261_18_CALLS_segments.bed.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01261_18_CALLS_segments.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01261_18_CALLS_segments.bed.gz",
    "raw_file_md5": "315104fa72b4dc92998b88f8f948d9a4",
    "data_category": "Enhancer",
    "classification": "ChromHMM consolidated enhancer chromatin states",
    "track_description": "version=2021;Original_cell_type=mesenchymal stem cell originated from H1-hESC;tissue_of_origin=Connective Tissue;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01261;extended_md.donor.ids=ENCDO000AAW;extended_md.collated.donors=ENCDO000AAW;extended_md.accession=ENCSR172CVZ,ENCSR832JVP,ENCSR433FJP,ENCSR734MEM,ENCSR491CCY,ENCSR786GJM,ENCSR526NKM,ENCSR824UNY,ENCSR731QLJ,ENCSR746CUY,ENCSR115PQP,ENCSR491VZZ,ENCSR250VGX,ENCSR448TUF,ENCSR501JET,ENCSR502IWF,ENCSR902EEI,ENCSR350YQC,ENCSR895YWA,ENCSR701KJD,ENCSR509MHV,ENCSR809CVZ,ENCSR719QMW,ENCSR594AQO,ENCSR013KEC,ENCSR604THF,ENCSR065HOR,ENCSR753RYH;extended_md.biosample.ids=ENCBS725VAK,ENCBS012DXH,ENCBS732PNZ,ENCBS012DXH,ENCBS783XLR,ENCBS725VAK,ENCBS725VAK;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no",
    "system_category": "Skeletal",
    "life_stage": "Embryonic",
    "track_name": "EpiMap_Enhancers Mesenchymal stem cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01261_Roadmap_2015_Enh_hg38.bed.gz.tbi"
  }
]