[
  {
    "identifier": "NGEPMEW7ABBSZV",
    "data_source": "EpiMap",
    "file_name": "formatted_output_BSS01657_ENCODE_All_hg38.bed.gz",
    "number_of_intervals": 317419,
    "bp_covered": 2820428400,
    "output_type": "chromatin states",
    "genome_build": "hg38",
    "cell_type": "Stomach",
    "biosample_type": "Tissue",
    "biosample_term_id": "UBERON:0000945",
    "tissue_category": "Digestive",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "consolidated",
    "assay": "ChromHMM",
    "file_format": "bed bed9",
    "file_size": 3113000,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38",
    "downloaded_date": "10/22/2021",
    "release_date": "02/19/2021",
    "date_added_to_filer": "05/20/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01657_ENCODE_All_hg38.bed.gz",
    "processed_file_md5": "7c9e445af29b4bed7fcfa52e992c5797",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01657_ENCODE_All_hg38.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/",
    "link_out_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/",
    "raw_file_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01657_18_CALLS_segments.bed.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01657_18_CALLS_segments.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01657_18_CALLS_segments.bed.gz",
    "raw_file_md5": "2957f29acc234d9d3436f65ae64d22c8",
    "data_category": "Chromatin states",
    "classification": "ChromHMM consolidated chromatin states",
    "track_description": "version=2021;Original_cell_type=stomach male embryo (58 days) and male embryo (76 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01657;extended_md.donor.ids=ENCDO647EYG,ENCDO652XOU;extended_md.collated.donors=ENCDO647EYG,ENCDO652XOU;extended_md.accession=ENCSR095GWE;extended_md.biosample.ids=ENCBS521MUU,ENCBS868NIA;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=58,76;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no",
    "system_category": "Digestive",
    "life_stage": "Embryonic",
    "track_name": "EpiMap Stomach ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01657_ENCODE_All_hg38.bed.gz.tbi"
  }
]