[
  {
    "identifier": "NGEPMHHYLNTYJ2",
    "data_source": "EpiMap",
    "file_name": "formatted_output_BSS01446_Roadmap_2021_All_hg38.bed.gz",
    "number_of_intervals": 371118,
    "bp_covered": 2820428400,
    "output_type": "chromatin states",
    "genome_build": "hg38",
    "cell_type": "Placental basal plate",
    "biosample_type": "Tissue",
    "biosample_term_id": "UBERON:8600019",
    "tissue_category": "Placenta",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "consolidated",
    "assay": "ChromHMM",
    "file_format": "bed bed9",
    "file_size": 3547248,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38",
    "downloaded_date": "10/22/2021",
    "release_date": "02/19/2021",
    "date_added_to_filer": "05/20/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01446_Roadmap_2021_All_hg38.bed.gz",
    "processed_file_md5": "909af59ba866c12ec63924351d54bb88",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01446_Roadmap_2021_All_hg38.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/",
    "link_out_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/",
    "raw_file_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01446_18_CALLS_segments.bed.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01446_18_CALLS_segments.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01446_18_CALLS_segments.bed.gz",
    "raw_file_md5": "d45c1a8f2867aaa1036669c8aa3a3cdb",
    "data_category": "Chromatin states",
    "classification": "ChromHMM consolidated chromatin states",
    "track_description": "version=2021;Original_cell_type=placental basal plate female embryo (40 weeks);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01446;extended_md.donor.ids=ENCDO651ROT;extended_md.collated.donors=ENCDO651ROT;extended_md.accession=ENCSR481QER,ENCSR047AFY,ENCSR312NYS,ENCSR194MJA,ENCSR526RGE,ENCSR566ZFQ;extended_md.biosample.ids=ENCBS001PEH;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=40;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=NTR:0003013;is_hg38_lifted=no",
    "system_category": "Placental",
    "life_stage": "Embryonic",
    "track_name": "EpiMap Placental basal plate ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01446_Roadmap_2021_All_hg38.bed.gz.tbi"
  }
]