[
  {
    "identifier": "NGEPMLLMQWT7XR",
    "data_source": "EpiMap_Enhancers",
    "file_name": "formatted_output_BSS01426_ENCODE_Enh_hg38.bed.gz",
    "number_of_intervals": 106297,
    "bp_covered": 78387800,
    "output_type": "enhancer chromatin states",
    "genome_build": "hg38",
    "cell_type": "Peyers patch",
    "biosample_type": "Tissue",
    "biosample_term_id": "UBERON:0001211",
    "tissue_category": "Immune",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "consolidated",
    "assay": "ChromHMM",
    "file_format": "bed bed9",
    "file_size": 979301,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38",
    "downloaded_date": "10/22/2021",
    "release_date": "02/19/2021",
    "date_added_to_filer": "05/20/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01426_ENCODE_Enh_hg38.bed.gz",
    "processed_file_md5": "66dd7f4dbceb0beda0ced2b33b2ca071",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01426_ENCODE_Enh_hg38.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/",
    "link_out_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/",
    "raw_file_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01426_18_CALLS_segments.bed.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01426_18_CALLS_segments.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01426_18_CALLS_segments.bed.gz",
    "raw_file_md5": "d73ec9bc8d04eeff916e4f6d9f618ec7",
    "data_category": "Enhancer",
    "classification": "ChromHMM consolidated enhancer chromatin states",
    "track_description": "version=2021;Original_cell_type=Peyer's patch female adult (53 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01426;extended_md.donor.ids=ENCDO793LXB;extended_md.collated.donors=ENCDO793LXB;extended_md.accession=ENCSR005UXZ,ENCSR017RQC,ENCSR878KIY,ENCSR982PLJ,ENCSR322UXF,ENCSR837SGJ,ENCSR621BZD,ENCSR363CJF;extended_md.biosample.ids=ENCBS877BPO,ENCBS766ILR,ENCBS147ACJ;extended_md.assay=ChIP-seq,ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=UBERON:0001211;is_hg38_lifted=no",
    "system_category": "Lymphatic",
    "life_stage": "Adult",
    "track_name": "EpiMap_Enhancers Peyers patch ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01426_ENCODE_Enh_hg38.bed.gz.tbi"
  }
]