[
  {
    "identifier": "NGEPMLTSPEWCHF",
    "data_source": "EpiMap",
    "file_name": "formatted_output_BSS00720_Roadmap_2015_All_hg38.bed.gz",
    "number_of_intervals": 762586,
    "bp_covered": 2820428400,
    "output_type": "chromatin states",
    "genome_build": "hg38",
    "cell_type": "IMR-90",
    "biosample_type": "Cell line",
    "biosample_term_id": "EFO:0001196",
    "tissue_category": "Lung",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "consolidated",
    "assay": "ChromHMM",
    "file_format": "bed bed9",
    "file_size": 7369880,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38",
    "downloaded_date": "10/22/2021",
    "release_date": "02/19/2021",
    "date_added_to_filer": "05/20/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00720_Roadmap_2015_All_hg38.bed.gz",
    "processed_file_md5": "7c38ad661383e40332a36fb7c544beb6",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00720_Roadmap_2015_All_hg38.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/",
    "link_out_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/",
    "raw_file_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00720_18_CALLS_segments.bed.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00720_18_CALLS_segments.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00720_18_CALLS_segments.bed.gz",
    "raw_file_md5": "d71d9688f005846a2b5c0ff60066be2b",
    "data_category": "Chromatin states",
    "classification": "ChromHMM consolidated chromatin states",
    "track_description": "version=2021;Original_cell_type=IMR-90;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00720;extended_md.donor.ids=ENCDO000AAX;extended_md.collated.donors=ENCDO000AAX;extended_md.accession=ENCSR431UUY,ENCSR066VKQ,ENCSR087PFU,ENCSR164RFI,ENCSR383CBN,ENCSR437ORF,ENCSR579TJT,ENCSR283STF,ENCSR942NME,ENCSR831JSP,ENCSR004ZWW,ENCSR054IRX,ENCSR038MKB,ENCSR000EKG,ENCSR477RTP,ENCSR124DYB,ENCSR210RXE,ENCSR580LZO,ENCSR523ENE,ENCSR553OEU,ENCSR444TMC,ENCSR672XZZ,ENCSR713QLX,ENCSR706RRA,ENCSR804SRO,ENCSR424ZJH,ENCSR055ZZY,ENCSR248KRU,ENCSR002YRE,ENCSR219MYH,ENCSR039ZLS,ENCSR274TJB;extended_md.biosample.ids=ENCBS007TVF,ENCBS472JFT,ENCBS048TNH,ENCBS472JFT,ENCBS982GUC,ENCBS780OTZ,ENCBS992YMT,ENCBS192DLO,ENCBS371NWL,ENCBS007TVF,ENCBS357USI,ENCBS192DLO,ENCBS371NWL,ENCBS754TWW,ENCBS357USI,ENCBS982GUC,ENCBS007TVF,ENCBS981IKS,ENCBS460CLV,ENCBS981IKS,ENCBS982GUC,ENCBS754TWW,ENCBS992YMT;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=16;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no",
    "system_category": "Respiratory",
    "life_stage": "Embryonic",
    "track_name": "EpiMap IMR-90 ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00720_Roadmap_2015_All_hg38.bed.gz.tbi"
  }
]