[
  {
    "identifier": "NGEPMNB2SNKDA3",
    "data_source": "EpiMap",
    "file_name": "formatted_output_BSS00368_Roadmap_2015_All_hg38.bed.gz",
    "number_of_intervals": 588084,
    "bp_covered": 2820428400,
    "output_type": "chromatin states",
    "genome_build": "hg38",
    "cell_type": "Keratinocyte",
    "biosample_type": "Primary cell",
    "biosample_term_id": "CL:0000312",
    "tissue_category": "Skin",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "consolidated",
    "assay": "ChromHMM",
    "file_format": "bed bed9",
    "file_size": 5693738,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38",
    "downloaded_date": "10/22/2021",
    "release_date": "02/19/2021",
    "date_added_to_filer": "05/20/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00368_Roadmap_2015_All_hg38.bed.gz",
    "processed_file_md5": "4446dc5e8f862dfbf68316f6ca287d9b",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00368_Roadmap_2015_All_hg38.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/",
    "link_out_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/",
    "raw_file_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00368_18_CALLS_segments.bed.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00368_18_CALLS_segments.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00368_18_CALLS_segments.bed.gz",
    "raw_file_md5": "138ea60106651571bbb45992ef76d1be",
    "data_category": "Chromatin states",
    "classification": "ChromHMM consolidated chromatin states",
    "track_description": "version=2021;Original_cell_type=foreskin melanocyte male newborn;tissue_of_origin=Foreskin;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00368;extended_md.donor.ids=ENCDO047TBB,ENCDO686OPO,ENCDO666YUN;extended_md.collated.donors=ENCDO686OPO,ENCDO666YUN,ENCDO047TBB;extended_md.accession=ENCSR518JGY,ENCSR423AKG,ENCSR434OBM,ENCSR801FWU,ENCSR481YGZ,ENCSR050FLB,ENCSR972NUZ,ENCSR571CSC,ENCSR147GWR,ENCSR382VAU,ENCSR227FYJ,ENCSR505THJ,ENCSR230KKL,ENCSR350JZR,ENCSR152GST,ENCSR693VHX,ENCSR324EPZ,ENCSR353LBX,ENCSR708IFN;extended_md.biosample.ids=ENCBS916SKO,ENCBS425NOG,ENCBS041UOV,ENCBS425NOG,ENCBS446CAU,ENCBS708ZTI;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=newborn;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no",
    "system_category": "Integumentary",
    "life_stage": "Newborn",
    "track_name": "EpiMap Keratinocyte ChromHMM consolidated chromatin states (bed9) [Life stage: Newborn] [Chromatin states]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00368_Roadmap_2015_All_hg38.bed.gz.tbi"
  }
]