[
  {
    "identifier": "NGEPMPSBR7QR3O",
    "data_source": "EpiMap_Enhancers",
    "file_name": "formatted_output_BSS00315_Roadmap_2015_Enh_hg38.bed.gz",
    "number_of_intervals": 184750,
    "bp_covered": 131616800,
    "output_type": "enhancer chromatin states",
    "genome_build": "hg38",
    "cell_type": "ES-I3",
    "biosample_type": "Stem cell",
    "biosample_term_id": "EFO:0007076",
    "tissue_category": "Embryo",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "consolidated",
    "assay": "ChromHMM",
    "file_format": "bed bed9",
    "file_size": 1704529,
    "filepath": "${TARGETDIR}/GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38",
    "downloaded_date": "10/22/2021",
    "release_date": "02/19/2021",
    "date_added_to_filer": "05/20/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00315_Roadmap_2015_Enh_hg38.bed.gz",
    "processed_file_md5": "8a97e5ac1c404be1171ec55cf13e0aee",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00315_Roadmap_2015_Enh_hg38.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/",
    "link_out_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/",
    "raw_file_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00315_18_CALLS_segments.bed.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00315_18_CALLS_segments.bed.gz -P ${TARGETDIR}/GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00315_18_CALLS_segments.bed.gz",
    "raw_file_md5": "e5eb6fe280723255c142d1d876439d0f",
    "data_category": "Enhancer",
    "classification": "ChromHMM consolidated enhancer chromatin states",
    "track_description": "version=2021;Original_cell_type=ES-I3;tissue_of_origin=Embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00315;extended_md.donor.ids=ENCDO840PTG;extended_md.collated.donors=ENCDO840PTG;extended_md.accession=ENCSR730FLZ,ENCSR844DRI,ENCSR097ORD,ENCSR895IWH;extended_md.biosample.ids=ENCBS593HOC,ENCBS401QZO,ENCBS268NCC,ENCBS421TWG,ENCBS312JDV,ENCBS057COO,ENCBS599JGY,ENCBS412HHB;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0007076;is_hg38_lifted=no",
    "system_category": "Embryo",
    "life_stage": "Embryonic",
    "track_name": "EpiMap_Enhancers ES-I3 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00315_Roadmap_2015_Enh_hg38.bed.gz.tbi"
  }
]