[
  {
    "identifier": "NGEPMWJSNG4KCE",
    "data_source": "EpiMap",
    "file_name": "formatted_output_BSS00478_Roadmap_2015_All_hg38.bed.gz",
    "number_of_intervals": 589887,
    "bp_covered": 2820428400,
    "output_type": "chromatin states",
    "genome_build": "hg38",
    "cell_type": "H1-hESC",
    "biosample_type": "Stem cell",
    "biosample_term_id": "EFO:0003042",
    "tissue_category": "Embryo",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "consolidated",
    "assay": "ChromHMM",
    "file_format": "bed bed9",
    "file_size": 5709876,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38",
    "downloaded_date": "10/22/2021",
    "release_date": "02/19/2021",
    "date_added_to_filer": "05/20/2024",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00478_Roadmap_2015_All_hg38.bed.gz",
    "processed_file_md5": "f22f14fff4268e5deee605f2786ac8db",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00478_Roadmap_2015_All_hg38.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/",
    "link_out_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/",
    "raw_file_url": "https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00478_18_CALLS_segments.bed.gz",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00478_18_CALLS_segments.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00478_18_CALLS_segments.bed.gz",
    "raw_file_md5": "9f7cf3e58f7ee52417840e3aaf430a2f",
    "data_category": "Chromatin states",
    "classification": "ChromHMM consolidated chromatin states",
    "track_description": "version=2021;Original_cell_type=H1-hESC;tissue_of_origin=Embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00478;extended_md.donor.ids=ENCDO000AAW;extended_md.collated.donors=ENCDO000AAW;extended_md.accession=ENCSR441UHO,ENCSR186OBR,ENCSR815LBP,ENCSR571IIS,ENCSR000ANA,ENCSR891KGZ,ENCSR000ANB,ENCSR000ANC,ENCSR000AND,ENCSR675FLJ,ENCSR000ALU,ENCSR301HRV,ENCSR000ANP,ENCSR395USV,ENCSR728SZE,ENCSR814XPE,ENCSR952GVX,ENCSR880SUY,ENCSR925LJZ,ENCSR794OFW,ENCSR000APX,ENCSR000APY,ENCSR000APZ,ENCSR848DUN,ENCSR057BTG,ENCSR326NQF,ENCSR322MEI,ENCSR768FWX,ENCSR216OGD,ENCSR739BZR,ENCSR003SSR,ENCSR271TFS,ENCSR442DGE,ENCSR364BKW,ENCSR000EMU,ENCSR038PFD,ENCSR000AMG,ENCSR000AMH,ENCSR130EML,ENCSR883AQJ,ENCSR496DCY,ENCSR703KXH,ENCSR991BTY,ENCSR687FDK,ENCSR019SQX,ENCSR858BOF,ENCSR476KTK,ENCSR813CTI,ENCSR631RJR,ENCSR443YAS,ENCSR928HYM,ENCSR000EJN,ENCSR462XRE,ENCSR161NON;extended_md.biosample.ids=ENCBS780AAA,ENCBS977TKX,ENCBS364BFI,ENCBS111ENC,ENCBS945MCY,ENCBS977TKX,ENCBS479XUT,ENCBS253TYD,ENCBS718AAA,ENCBS706WYC,ENCBS977TKX,ENCBS929BKG,ENCBS945MCY,ENCBS428NIG,ENCBS626BQK,ENCBS982HXP,ENCBS717WTB,ENCBS945MCY,ENCBS011NFB,ENCBS984IPH,ENCBS083WOY,ENCBS285QSX,ENCBS055BDT,ENCBS479XUT,ENCBS409PYK,ENCBS103ZIA,ENCBS740OND,ENCBS534NMZ,ENCBS899NYB,ENCBS497CZZ,ENCBS952IPA,ENCBS984IPH,ENCBS534NMZ,ENCBS368BPP,ENCBS497CZZ,ENCBS055DBZ,ENCBS368BPP,ENCBS819TBN,ENCBS081AUS,ENCBS534NMZ,ENCBS081AUS,ENCBS570AYT,ENCBS513BIK,ENCBS282MUP,ENCBS215WGD;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no",
    "system_category": "Embryo",
    "life_stage": "Embryonic",
    "track_name": "EpiMap H1-hESC ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00478_Roadmap_2015_All_hg38.bed.gz.tbi"
  }
]