[
  {
    "identifier": "NGFDGLG36DGRRL",
    "data_source": "4DGenome",
    "file_name": "formatted_output_ChIA-PET_MCF7_lifted.bed.gz",
    "number_of_intervals": 130538,
    "bp_covered": 581563866,
    "output_type": "chromatin interactions",
    "genome_build": "hg38",
    "cell_type": "MCF-7",
    "biosample_type": "Immortalized cell line",
    "biosample_term_id": "EFO:0001203",
    "tissue_category": "Breast",
    "encode_experiment_id": "Not applicable",
    "biological_replicate": "Not reported",
    "technical_replicate": "Not applicable",
    "antibody": "ER-alpha",
    "assay": "ChIA-PET",
    "file_format": "bed bed4+19 interact",
    "file_size": 5800469,
    "filepath": "${TARGETDIR}/FILER2/Annotationtracks/hg38_lifted/4DGenome/ChIA-PET/bed4plus19_interact/hg38",
    "downloaded_date": "06/10/2022",
    "release_date": "08/15/2014",
    "date_added_to_filer": "12/04/2025",
    "processed_file_download_url": "https://filer2.niagads.org/Annotationtracks/hg38_lifted/4DGenome/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ChIA-PET_MCF7_lifted.bed.gz",
    "processed_file_md5": "a9df9c9ae6417353bf3d806a25598140",
    "wget_command": "wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/4DGenome/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ChIA-PET_MCF7_lifted.bed.gz -P ${TARGETDIR}/FILER2/Annotationtracks/hg38_lifted/4DGenome/ChIA-PET/bed4plus19_interact/hg38/",
    "link_out_url": "https://4dgenome.research.chop.edu/",
    "raw_file_url": "Not applicable",
    "raw_file_download": "wget https://filer2.niagads.org/Annotationtracks/Downloads/4DGenome/ChIA-PET_MCF7.txt.lifted.bed -P ${TARGETDIR}/FILER2/Annotationtracks/Downloads/4DGenome/ChIA-PET_MCF7.txt.lifted.bed",
    "raw_file_md5": "f58aeb6f82a9d8880771d2814ff92230",
    "data_category": "Chromatin interactions",
    "classification": "ChIA-PET chromatin interactions",
    "track_description": "version=2015;Original_cell_type=MCF7;doi=https://doi.org/10.1093/bioinformatics/btv158;value_description=Fit Hi-C Confidence Score;pubmed_id=19890323, 22265404;schema=BED4+19;dataSource_pubmed_id=25788621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/4DGenome.html;original_biosample_term_id=Not available;is_hg38_lifted=yes",
    "system_category": "Reproductive",
    "life_stage": "Adult",
    "track_name": "4DGenome MCF-7 ChIA-PET ER-alpha chromatin interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]",
    "tabix_file_url": "https://filer2.niagads.org/Annotationtracks/hg38_lifted/4DGenome/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ChIA-PET_MCF7_lifted.bed.gz.tbi"
  }
]