H3K27me3 • Brain NGENCMEVZSODL4 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Brain Histone Show metadata Download track Track metadata identifier NGENCMEVZSODL4 data_source ENCODE Download track Download number_of_intervals 100,237 bp_covered 65,287,568 output_type replicated peaks genome_build hg38 cell_type Brain biosample_type Organoid biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id ENCSR070JEZ biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 2,904,950 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF108FTF.bed.gz processed_file_md5 6821ad8bd22c68d15d6445b4585f79aa wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF108FTF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF108FTF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF108FTF/@@download/ENCFF108FTF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF108FTF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9bb1c495f9c5f31662d31d7fd85c09dc data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens brain organoid, 180 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE176908;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2020-07-06;Submitted_track_name=rep2_vs_rep3.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 1_2, 2_1, 2_2, 3_1, 3_2;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Embryonic track_name ENCODE Brain (repl. 2, 3) Mint-ChIP-seq H3K27me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR070JEZ] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • CD4+ alpha-beta T cell NGENCMEWP7NJPE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq CD4+ alpha-beta T cell Histone Show metadata Download track Track metadata identifier NGENCMEWP7NJPE data_source ENCODE Download track Download number_of_intervals 46,495 bp_covered 43,301,629 output_type replicated peaks genome_build hg38 cell_type CD4+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000624 tissue_category Blood encode_experiment_id ENCSR043SBG biological_replicate 1, 2 technical_replicate 1_4, 2_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,038,889 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF525CHS.bed.gz processed_file_md5 ed4e01282c8f08956f7a97b644f026c5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF525CHS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF525CHS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF525CHS/@@download/ENCFF525CHS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF525CHS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0d61c2fe26a70fcd6f1dc0db5d995700 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD4-positive, alpha-beta T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM772868,GEO:GSM997231;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=CD4-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=CD4-positive, alpha-beta T-cell,CD4-positive, alpha-beta T lymphocyte,CD4-positive, alpha-beta T-lymphocyte;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000624;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD4+ alpha-beta T cell (repl. 1, 2) Histone ChIP-seq H3K27me3 replicated peaks (narrowPeak) [Experiment: ENCSR043SBG] [Histone ChIP-seq peaks]
H3K27me3 • Kidney NGENCMFD4KXBC6 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Kidney Histone Show metadata Download track Track metadata identifier NGENCMFD4KXBC6 data_source ENCODE Download track Download number_of_intervals 14,357 bp_covered 8,286,079 output_type pseudoreplicated peaks genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id ENCSR761KZV biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 274,270 downloaded_date 06/12/2022 release_date 03/18/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF784RMZ.bed.gz processed_file_md5 1079f113dd7d7f66b57863428f17c643 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF784RMZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF784RMZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF784RMZ/@@download/ENCFF784RMZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF784RMZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 84212ea985da1c60eafa762d636cf430 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens kidney tissue female embryo (120 days);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 120 days;Reference=PMID:32728046;External_resources=GEO:GSM621424;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=kidney;ENCODE_cell_slims=NR;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002113;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Renal life_stage Embryonic track_name ENCODE Kidney (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR761KZV] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • BLaER1 NGENCMFRGL5JSQ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCMFRGL5JSQ data_source ENCODE Download track Download number_of_intervals 48,595 bp_covered 86,631,174 output_type pseudoreplicated peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR921OXE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,152,432 downloaded_date 05/15/2024 release_date 02/17/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF383FCW.bed.gz processed_file_md5 89208f39523d14b760fed985fd103c4a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF383FCW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF383FCW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF383FCW/@@download/ENCFF383FCW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF383FCW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a4e3e335f503b65c196993191e8b4432 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 18 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258276;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR921OXE] [Histone ChIP-seq peaks]
H3K27me3 • Natural killer cell NGENCMGYX6XXOC • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Natural killer cell Histone Show metadata Download track Track metadata identifier NGENCMGYX6XXOC data_source ENCODE Download track Download number_of_intervals 331,883 bp_covered 94,969,218 output_type pseudoreplicated peaks genome_build hg38 cell_type Natural killer cell biosample_type Primary cell biosample_term_id CL:0000623 tissue_category Blood encode_experiment_id ENCSR565WDW biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 8,772,566 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF371JRG.bed.gz processed_file_md5 9306e02deb4bfb8efbcbc6d2f73d5064 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF371JRG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF371JRG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF371JRG/@@download/ENCFF371JRG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF371JRG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2a24d30656f8af576d91da6b1eaed8ed data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens with multiple sclerosis| immature natural killer cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE209032;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-04-29,2020-09-05;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=immature natural killer cell;ENCODE_cell_slims=NK cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=immature NK cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000823;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE Natural killer cell (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR565WDW] [Histone ChIP-seq peaks]
H3K27me3 • BLaER1 NGENCMHZM7Q5AI • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCMHZM7Q5AI data_source ENCODE Download track Download number_of_intervals 8,663 bp_covered 20,387,437 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR597XRK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed bed3+1 score file_size 75,451 downloaded_date 06/12/2022 release_date 01/27/2022 date_added_to_filer 11/08/2022 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF024UVE.bed.gz processed_file_md5 4dd00340790e961b63de057b3a8bcfb1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF024UVE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF024UVE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF024UVE/@@download/ENCFF024UVE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF024UVE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0538bf38653fbb09e641e54efee594c1 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 48 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258013;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H048H3K27me3_zerone_merged.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED3+1;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K27me3 peaks (bed3+1 score) [Experiment: ENCSR597XRK] [Histone ChIP-seq peaks]
H3K27me3 • WTC11 NGENCMI2BN7EEH • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq WTC11 Histone Show metadata Download track Track metadata identifier NGENCMI2BN7EEH data_source ENCODE Download track Download number_of_intervals 105,595 bp_covered 103,372,042 output_type replicated peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR418YEV biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 2,938,567 downloaded_date 06/12/2022 release_date 05/11/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF307WIF.bed.gz processed_file_md5 b9a60ebdb33ec739d6cc2640923262d5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF307WIF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF307WIF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF307WIF/@@download/ENCFF307WIF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF307WIF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8ad94a3230224398821622ed309f1a04 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE188142;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-09-27;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=fibroblast,induced pluripotent stem cell,stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) Mint-ChIP-seq H3K27me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR418YEV] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • HUES64 NGENCMI4UVKMKY • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HUES64 Histone Show metadata Download track Track metadata identifier NGENCMI4UVKMKY data_source ENCODE Download track Download number_of_intervals 33,729 bp_covered 44,479,688 output_type pseudoreplicated peaks genome_build hg38 cell_type HUES64 biosample_type Cell line biosample_term_id EFO:0007089 tissue_category Embryo encode_experiment_id ENCSR634MAK biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 824,748 downloaded_date 06/12/2022 release_date 11/19/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF443WXO.bed.gz processed_file_md5 0eea37c68228dc6baf2fffee8c8c9387 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF443WXO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF443WXO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF443WXO/@@download/ENCFF443WXO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF443WXO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fd12dff0f44ce802e40f8c33da6dda56 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HUES64;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM669974,GEO:GSM772750;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HUES64;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007089;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE HUES64 (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR634MAK] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • Cardiac muscle cell NGENCMIPWKVX6P • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Cardiac muscle cell Histone Show metadata Download track Track metadata identifier NGENCMIPWKVX6P data_source ENCODE Download track Download number_of_intervals 40,567 bp_covered 53,413,840 output_type pseudoreplicated peaks genome_build hg38 cell_type Cardiac muscle cell biosample_type In vitro differentiated cells biosample_term_id CL:0000746 tissue_category Heart encode_experiment_id ENCSR864LRY biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 958,596 downloaded_date 06/12/2022 release_date 11/02/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF956ADH.bed.gz processed_file_md5 72c0eef3f634f4eabed2a1bac77533bf wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF956ADH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF956ADH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF956ADH/@@download/ENCFF956ADH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF956ADH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4f0bd219f7b8a1056d2364f26dd4f469 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens cardiac muscle cell originated from RUES2;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE96430;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=cardiac muscle cell;ENCODE_cell_slims=cardiocyte;ENCODE_system_slims=musculature,circulatory system;ENCODE_biosample_term_synonyms=cardiac myocyte,cardiomyocyte,cardiac muscle fiber,heart muscle cell;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000746;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Embryonic track_name ENCODE Cardiac muscle cell (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR864LRY] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • Chondrocyte NGENCMJBIMROKB • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Chondrocyte Histone Show metadata Download track Track metadata identifier NGENCMJBIMROKB data_source ENCODE Download track Download number_of_intervals 263,068 bp_covered 115,746,716 output_type pseudoreplicated peaks genome_build hg38 cell_type Chondrocyte biosample_type In vitro differentiated cells biosample_term_id CL:0000138 tissue_category Bone encode_experiment_id ENCSR436PLB biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,761,442 downloaded_date 06/12/2022 release_date 06/21/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF305IQT.bed.gz processed_file_md5 83c1f28567f1f6fea7268ec2a50fa17f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF305IQT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF305IQT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF305IQT/@@download/ENCFF305IQT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF305IQT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 285fdcc862fb97cae7ef13c55df0a501 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens chondrocyte;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE187652;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-06-24,2021-04-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=chondrocyte;ENCODE_cell_slims=connective tissue cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=cartilage cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000138;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Skeletal life_stage Embryonic track_name ENCODE Chondrocyte (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR436PLB] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • GM23338 NGENCMLDC2ZU2H • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq GM23338 Histone Show metadata Download track Track metadata identifier NGENCMLDC2ZU2H data_source ENCODE Download track Download number_of_intervals 270,314 bp_covered 88,013,570 output_type pseudoreplicated peaks genome_build hg38 cell_type GM23338 biosample_type Cell line biosample_term_id EFO:0007950 tissue_category iPSC encode_experiment_id ENCSR695NNR biological_replicate 2 technical_replicate 2_1, 2_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,169,280 downloaded_date 05/15/2024 release_date 09/15/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF463THX.bed.gz processed_file_md5 7089aa2529192bb07fcb938a67413b9a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF463THX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF463THX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF463THX/@@download/ENCFF463THX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF463THX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a57d1aeb655e6fc34e689fff0360188c data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM23338;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE257811;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-07-18,2020-07-06;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM23338;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007950;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Adult track_name ENCODE GM23338 (repl. 2) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR695NNR] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Mesothelial cell NGENCMMEQHWXRU • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Mesothelial cell Histone Show metadata Download track Track metadata identifier NGENCMMEQHWXRU data_source ENCODE Download track Download number_of_intervals 257,459 bp_covered 131,475,089 output_type pseudoreplicated peaks genome_build hg38 cell_type Mesothelial cell biosample_type In vitro differentiated cells biosample_term_id CL:0000077 tissue_category Heart encode_experiment_id ENCSR947ZBW biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,898,313 downloaded_date 06/12/2022 release_date 06/19/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF387NIE.bed.gz processed_file_md5 ac10dbbffae01f0fb8732882d4ecb3ed wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF387NIE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF387NIE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF387NIE/@@download/ENCFF387NIE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF387NIE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 220bb712cd0586a8ea098ecaaba414a7 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mesothelial cell of epicardium;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE188178;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-06-24;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mesothelial cell of epicardium;ENCODE_cell_slims=cardiocyte,epithelial cell;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0011019;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Embryonic track_name ENCODE Mesothelial cell (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR947ZBW] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • GM23338 NGENCMNJ65U2NP • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq GM23338 Histone Show metadata Download track Track metadata identifier NGENCMNJ65U2NP data_source ENCODE Download track Download number_of_intervals 273,980 bp_covered 86,339,711 output_type pseudoreplicated peaks genome_build hg38 cell_type GM23338 biosample_type Cell line biosample_term_id EFO:0007950 tissue_category iPSC encode_experiment_id ENCSR695NNR biological_replicate 3 technical_replicate 3_1, 3_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,094,762 downloaded_date 05/15/2024 release_date 09/15/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF178LIN.bed.gz processed_file_md5 32b9630f754956095bba76f550900d5a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF178LIN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF178LIN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF178LIN/@@download/ENCFF178LIN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF178LIN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2a12b8496fb3a55395d043080bfd3e33 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens GM23338;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE257811;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-07-18,2020-07-06;Submitted_track_name=rep3-pr1_vs_rep3-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM23338;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007950;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Adult track_name ENCODE GM23338 (repl. 3) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR695NNR] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Placenta NGENCMNPNEB66T • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Placenta Histone Show metadata Download track Track metadata identifier NGENCMNPNEB66T data_source ENCODE Download track Download number_of_intervals 42,088 bp_covered 28,821,766 output_type pseudoreplicated peaks genome_build hg38 cell_type Placenta biosample_type Tissue biosample_term_id UBERON:0001987 tissue_category Placenta encode_experiment_id ENCSR273NXD biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 925,950 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF249OJZ.bed.gz processed_file_md5 5e5e51b29d65e7cf58fd8c852500cf39 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF249OJZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF249OJZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF249OJZ/@@download/ENCFF249OJZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF249OJZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4c0e8004f6a3701e2bdf021a2c305cf8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens placenta tissue male embryo (16 weeks);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=NR;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=placenta;ENCODE_cell_slims=NR;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=eutherian placenta,allantoic placenta;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001987;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Placental life_stage Embryonic track_name ENCODE Placenta (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR273NXD] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • iPS DF 19.11 NGENCMOMNNUYAS • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq iPS DF 19.11 Histone Show metadata Download track Track metadata identifier NGENCMOMNNUYAS data_source ENCODE Download track Download number_of_intervals 8,480 bp_covered 11,047,866 output_type replicated peaks genome_build hg38 cell_type iPS DF 19.11 biosample_type Cell line biosample_term_id EFO:0007096 tissue_category iPSC encode_experiment_id ENCSR100PNV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 203,325 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF753IAT.bed.gz processed_file_md5 102a717d3b1cede7294b9b94c08878ef wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF753IAT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF753IAT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF753IAT/@@download/ENCFF753IAT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF753IAT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fcb0a4e2f3fb64863eca9e1e209e60f8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens iPS DF 19.11;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM752970,GEO:GSM706067;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=iPS DF 19.11;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=reproductive system,integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007096;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Newborn track_name ENCODE iPS DF 19.11 (repl. 1, 2) Histone ChIP-seq H3K27me3 replicated peaks (narrowPeak) [Experiment: ENCSR100PNV] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K27me3 • T-cell NGENCMOMPGQQAG • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq T-cell Histone Show metadata Download track Track metadata identifier NGENCMOMPGQQAG data_source ENCODE Download track Download number_of_intervals 199,426 bp_covered 110,608,318 output_type pseudoreplicated peaks genome_build hg38 cell_type T-cell biosample_type Primary cell biosample_term_id CL:0000084 tissue_category Immune encode_experiment_id ENCSR920EOT biological_replicate 1 technical_replicate 1_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,917,544 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF742RXI.bed.gz processed_file_md5 bacfc315294877a165d09312d6a0a2ed wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF742RXI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF742RXI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF742RXI/@@download/ENCFF742RXI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF742RXI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 28cb5fd50a8203e695794ef30cf9cac9 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens T-cell male adult (37 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 37 years;Reference=PMID:32728046;External_resources=GEO:GSM1102787;Project=Roadmap;Award=U01ES017156;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=T-cell;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=T-lymphocyte,T-cell,T lymphocyte;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000084;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE T-cell (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR920EOT] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Adrenal gland NGENCMPMOC655F • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Adrenal gland Histone Show metadata Download track Track metadata identifier NGENCMPMOC655F data_source ENCODE Download track Download number_of_intervals 75 bp_covered 25,882 output_type pseudoreplicated peaks genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR181JFC biological_replicate 1 technical_replicate 1_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,787 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF962BQJ.bed.gz processed_file_md5 6e0286b729f60ed6b617272e33e1db03 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF962BQJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF962BQJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF962BQJ/@@download/ENCFF962BQJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF962BQJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8726bbd9a392068634fce1cbc0fda57d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens adrenal gland tissue male adult (34 years);Lab=Bing Ren, UCSD;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 34 years;Reference=PMID:32728046;External_resources=GEO:GSM1220285;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=adrenal gland;ENCODE_cell_slims=NR;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=glandula suprarenalis,glandula adrenalis;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Adult track_name ENCODE Adrenal gland (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR181JFC] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Amnion NGENCMPWEZ4VRJ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Amnion Histone Show metadata Download track Track metadata identifier NGENCMPWEZ4VRJ data_source ENCODE Download track Download number_of_intervals 18,558 bp_covered 18,614,849 output_type pseudoreplicated peaks genome_build hg38 cell_type Amnion biosample_type Tissue biosample_term_id UBERON:0000305 tissue_category Placenta encode_experiment_id ENCSR144NDE biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 377,596 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF432PZS.bed.gz processed_file_md5 d8a08e438712d09f58942cf2c73011c7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF432PZS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF432PZS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF432PZS/@@download/ENCFF432PZS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF432PZS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5eeb47940c74782de6e92532419fca13 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens amnion tissue male embryo (16 weeks);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=PMID:32728046;External_resources=GEO:GSM1127139;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=amnion;ENCODE_cell_slims=NR;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=amnios;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000305;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Placental life_stage Embryonic track_name ENCODE Amnion (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR144NDE] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • Naive thymus-derived CD8+ alpha-beta T cell NGENCMPY7OSQVU • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Naive thymus-derived CD8+ alpha-beta T cell Histone Show metadata Download track Track metadata identifier NGENCMPY7OSQVU data_source ENCODE Download track Download number_of_intervals 166,330 bp_covered 163,570,811 output_type pseudoreplicated peaks genome_build hg38 cell_type Naive thymus-derived CD8+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000900 tissue_category Blood encode_experiment_id ENCSR555TTA biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 4,348,747 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF289GNI.bed.gz processed_file_md5 578c0546beff49834a327419221d3726 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF289GNI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF289GNI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF289GNI/@@download/ENCFF289GNI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF289GNI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 463aa0ffbf1fcceeac3bad20fb109da0 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE208984;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-04-29,2020-08-04;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=naive thymus-derived CD8-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=naive thymus-dervied CD8-positive, alpha-beta T-cell,naive thymus-dervied CD8-positive, alpha-beta T lymphocyte,naive thymus-dervied CD8-positive, alpha-beta T-lymphocyte;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000900;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE Naive thymus-derived CD8+ alpha-beta T cell (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR555TTA] [Histone ChIP-seq peaks]
H3K27me3 • Substantia nigra NGENCMRJPHHC4W • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Substantia nigra Histone Show metadata Download track Track metadata identifier NGENCMRJPHHC4W data_source ENCODE Download track Download number_of_intervals 16,992 bp_covered 12,439,922 output_type pseudoreplicated peaks genome_build hg38 cell_type Substantia nigra biosample_type Tissue biosample_term_id UBERON:0002038 tissue_category Brain encode_experiment_id ENCSR374OSU biological_replicate 1 technical_replicate 1_3 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 337,350 downloaded_date 06/12/2022 release_date 02/12/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF890BZS.bed.gz processed_file_md5 469b9729958238384ddc07b77be72aa0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF890BZS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF890BZS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF890BZS/@@download/ENCFF890BZS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF890BZS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 46e13c73f4ac4f913763ebee0d33d567 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens substantia nigra tissue male adult (81 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=adult 81 years;Reference=PMID:32728046;External_resources=GEO:GSM772937;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=substantia nigra;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=nucleus of basis pedunculi,Soemmering's substance;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002038;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Substantia nigra (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR374OSU] [Life stage: Adult] [Histone ChIP-seq peaks]