H3K27me3 • Mucosa NGENCNH4VNYGPO • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mucosa Histone Show metadata Download track Track metadata identifier NGENCNH4VNYGPO data_source ENCODE Download track Download number_of_intervals 35,101 bp_covered 21,962,445 output_type pseudoreplicated peaks genome_build hg38 cell_type Mucosa biosample_type Tissue biosample_term_id UBERON:0000344 tissue_category Digestive encode_experiment_id ENCSR645NLL biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 681,855 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF299XQZ.bed.gz processed_file_md5 b2f840b745edb965759f1e56bac5ad8f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF299XQZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF299XQZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF299XQZ/@@download/ENCFF299XQZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF299XQZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8aae14950362624b23baaaf219342161 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens duodenal mucosa tissue male adult (76 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 76 years;Reference=PMID:32728046;External_resources=GEO:GSM621460;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=duodenal mucosa;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=mucosa of duodenum,doudenal mucosa,mucous membrane of duodenum,duodenal mucous membrane;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000320;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Mucosa (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR645NLL] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • CD14+ monocyte NGENCNHWOTAG62 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD14+ monocyte Histone Show metadata Download track Track metadata identifier NGENCNHWOTAG62 data_source ENCODE Download track Download number_of_intervals 290,476 bp_covered 164,520,642 output_type pseudoreplicated peaks genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id ENCSR690NZN biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 8,040,091 downloaded_date 06/12/2022 release_date 09/15/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF934FXC.bed.gz processed_file_md5 7f8171ae3fd37ee14baebce79634cf5a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF934FXC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF934FXC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF934FXC/@@download/ENCFF934FXC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF934FXC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4bb0857020618c8ab6b6a800ee75dc01 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD14-positive monocyte;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE209507;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-04-29,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=CD14-positive monocyte;ENCODE_cell_slims=leukocyte,myeloid cell,monocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0001054;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD14+ monocyte (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR690NZN] [Histone ChIP-seq peaks]
H3K27me3 • Brain NGENCNJF6YOJ45 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Brain Histone Show metadata Download track Track metadata identifier NGENCNJF6YOJ45 data_source ENCODE Download track Download number_of_intervals 295,769 bp_covered 93,393,098 output_type pseudoreplicated peaks genome_build hg38 cell_type Brain biosample_type Organoid biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id ENCSR708ZJU biological_replicate 2 technical_replicate 2_1, 2_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,634,110 downloaded_date 06/12/2022 release_date 05/12/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF048NCF.bed.gz processed_file_md5 f6cee1bd1348c898787d4e00329b4e57 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF048NCF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF048NCF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF048NCF/@@download/ENCFF048NCF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF048NCF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 51a4f9f6e3650a9940b7ee4290d4bed8 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens brain organoid, 90 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE208873;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-11-18,2020-07-06;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=brain;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000955;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Brain (repl. 2) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR708ZJU] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Epithelial cell NGENCNKAEOVMKC • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Epithelial cell Histone Show metadata Download track Track metadata identifier NGENCNKAEOVMKC data_source ENCODE Download track Download number_of_intervals 26,727 bp_covered 4,859,751 output_type pseudoreplicated peaks genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Breast encode_experiment_id ENCSR000DUT biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 441,032 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF927QUF.bed.gz processed_file_md5 12d7d23cde1cbcabf551f301e657a412 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF927QUF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF927QUF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF927QUF/@@download/ENCFF927QUF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF927QUF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 cbf41e8a723ed0fad61a9033a986f924 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mammary epithelial cell female;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000408,GEO:GSM945277;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2011-02-11,2011-03-17;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mammary epithelial cell;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=exocrine system,integumental system;ENCODE_biosample_term_synonyms=mammary epithelial cell,breast epithelial cell;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002327;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Unknown track_name ENCODE Epithelial cell (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DUT] [Histone ChIP-seq peaks]
H3K27me3 • Middle frontal area BA46 NGENCNMUTJ7FQE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Middle frontal area BA46 Histone Show metadata Download track Track metadata identifier NGENCNMUTJ7FQE data_source ENCODE Download track Download number_of_intervals 30,597 bp_covered 24,294,462 output_type pseudoreplicated peaks genome_build hg38 cell_type Middle frontal area BA46 biosample_type Tissue biosample_term_id UBERON:0006483 tissue_category Brain encode_experiment_id ENCSR919ZDE biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 583,399 downloaded_date 06/12/2022 release_date 06/23/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF149NRI.bed.gz processed_file_md5 4e7710beb7bf8134ba8c0632587f6348 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF149NRI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF149NRI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF149NRI/@@download/ENCFF149NRI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF149NRI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0ba6deda4c91bd3438f6ac41eb3232d3 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens with Cognitive impairment| dorsolateral prefrontal cortex tissue female adult (81 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RushAD,RegulomeDB_2_2;Life_stage_age=adult 81 years;Reference=NR;External_resources=GEO:GSE188110;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-06-24,2021-06-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=dorsolateral prefrontal cortex;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0006483;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Middle frontal area BA46 (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR919ZDE] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • SJCRH30 NGENCNOC6S57GM • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq SJCRH30 Histone Show metadata Download track Track metadata identifier NGENCNOC6S57GM data_source ENCODE Download track Download number_of_intervals 29,013 bp_covered 22,339,764 output_type pseudoreplicated peaks genome_build hg38 cell_type SJCRH30 biosample_type Cell line biosample_term_id EFO:0005722 tissue_category Skeletal Muscle encode_experiment_id ENCSR022MBN biological_replicate 2 technical_replicate 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 688,514 downloaded_date 06/12/2022 release_date 08/25/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF441UXU.bed.gz processed_file_md5 3f4cb33dc29b8b9b3291c2fe9cf3afda wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF441UXU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF441UXU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF441UXU/@@download/ENCFF441UXU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF441UXU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 be92ae8581df3fe735440d82abe5bbc1 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens SJCRH30;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 17 years;Reference=NR;External_resources=GEO:GSE167614;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-28,2020-08-21;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SJCRH30;ENCODE_cell_slims=fibroblast,cancer cell,connective tissue cell;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=RMS 13,CRL-2061;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005722;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Child track_name ENCODE SJCRH30 (repl. 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR022MBN] [Life stage: Child] [Histone ChIP-seq peaks]
H3K27me3 • BLaER1 NGENCNOWRYDTNT • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCNOWRYDTNT data_source ENCODE Download track Download number_of_intervals 6,827 bp_covered 17,864,173 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR285PDU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed bed3+1 score file_size 60,072 downloaded_date 06/12/2022 release_date 01/27/2022 date_added_to_filer 11/08/2022 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF972GLS.bed.gz processed_file_md5 6f6cf08fd8def7c166def0a6498b0b5e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF972GLS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF972GLS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF972GLS/@@download/ENCFF972GLS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF972GLS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a0d5feb95cdcd504411e300bbdafe798 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 24 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE256663;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H024H3K27me3_zerone_merged.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED3+1;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K27me3 peaks (bed3+1 score) [Experiment: ENCSR285PDU] [Histone ChIP-seq peaks]
H3K27me3 • Astrocyte NGENCNP7SDGJYS • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Astrocyte Histone Show metadata Download track Track metadata identifier NGENCNP7SDGJYS data_source ENCODE Download track Download number_of_intervals 44,280 bp_covered 23,622,372 output_type pseudoreplicated peaks genome_build hg38 cell_type Astrocyte biosample_type Primary cell biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id ENCSR000AOR biological_replicate 2 technical_replicate 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 925,089 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF140VNW.bed.gz processed_file_md5 aae6878ee56391fcf638c992c0e6cc52 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF140VNW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF140VNW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF140VNW/@@download/ENCFF140VNW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF140VNW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 549a9c4c3d9e91ee46ab8508221e2ab3 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens astrocyte;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM733729,UCSC-ENCODE-hg19:wgEncodeEH001029;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=astrocyte;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=astrocytic glia;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000127;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Unknown track_name ENCODE Astrocyte (repl. 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AOR] [Histone ChIP-seq peaks]
H3K27me3 • T-cell NGENCNSCKEVK7O • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq T-cell Histone Show metadata Download track Track metadata identifier NGENCNSCKEVK7O data_source ENCODE Download track Download number_of_intervals 282,981 bp_covered 130,287,678 output_type pseudoreplicated peaks genome_build hg38 cell_type T-cell biosample_type Primary cell biosample_term_id CL:0000084 tissue_category Immune encode_experiment_id ENCSR006CYO biological_replicate 1 technical_replicate 1_1, 1_2, 1_3, 1_4 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,672,657 downloaded_date 06/12/2022 release_date 05/06/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF713SRQ.bed.gz processed_file_md5 ba0ff6168fd5bf2d91dba13e220a3096 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF713SRQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF713SRQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF713SRQ/@@download/ENCFF713SRQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF713SRQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6f60a8edfafccb66bd92d55826982818 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens T-cell male adult (42 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 42 years;Reference=NR;External_resources=GEO:GSE176621;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2021-04-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=T-cell;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=T-lymphocyte,T-cell,T lymphocyte;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000084;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE T-cell (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR006CYO] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Middle frontal area BA46 NGENCNSRDJCVGB • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Middle frontal area BA46 Histone Show metadata Download track Track metadata identifier NGENCNSRDJCVGB data_source ENCODE Download track Download number_of_intervals 91,709 bp_covered 76,346,642 output_type pseudoreplicated peaks genome_build hg38 cell_type Middle frontal area BA46 biosample_type Tissue biosample_term_id UBERON:0006483 tissue_category Brain encode_experiment_id ENCSR346PKZ biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,880,882 downloaded_date 06/12/2022 release_date 09/16/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF974LSP.bed.gz processed_file_md5 48250f2d53c09846b672601807d28670 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF974LSP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF974LSP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF974LSP/@@download/ENCFF974LSP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF974LSP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 cc100f17899840c3355df4b415c5f81c data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens with mild cognitive impairment| dorsolateral prefrontal cortex tissue female adult (90 or above years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RushAD,RegulomeDB_2_2;Life_stage_age=adult 90 or above years;Reference=NR;External_resources=GEO:GSE187230;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-09-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=dorsolateral prefrontal cortex;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0006483;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Middle frontal area BA46 (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR346PKZ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Ectodermal cell NGENCNSWPVQHNV • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Ectodermal cell Histone Show metadata Download track Track metadata identifier NGENCNSWPVQHNV data_source ENCODE Download track Download number_of_intervals 26,795 bp_covered 46,747,999 output_type pseudoreplicated peaks genome_build hg38 cell_type Ectodermal cell biosample_type In vitro differentiated cells biosample_term_id CL:0000221 tissue_category Embryo encode_experiment_id ENCSR690GLT biological_replicate 1, 3 technical_replicate 1_2, 3_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 641,498 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF682FRC.bed.gz processed_file_md5 424ef5e815ea2375bb9f03f189800d9f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF682FRC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF682FRC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF682FRC/@@download/ENCFF682FRC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF682FRC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 28ee2097d3a0d7ed7bc3aa5925c2f0c0 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens ectodermal cell originated from HUES64;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1112827,GEO:GSM997247;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=ectodermal cell;ENCODE_cell_slims=embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=ectoderm cell;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000221;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Ectodermal cell (repl. 1, 3) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR690GLT] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • Neuronal stem cell NGENCNWT67TTQN • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neuronal stem cell Histone Show metadata Download track Track metadata identifier NGENCNWT67TTQN data_source ENCODE Download track Download number_of_intervals 13,266 bp_covered 8,672,451 output_type pseudoreplicated peaks genome_build hg38 cell_type Neuronal stem cell biosample_type In vitro differentiated cells biosample_term_id CL:0000047 tissue_category Embryo encode_experiment_id ENCSR694LBI biological_replicate 2 technical_replicate 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 293,147 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF941JQY.bed.gz processed_file_md5 a2a86a18a0cd8efa7ba127df2eb02b6a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF941JQY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF941JQY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF941JQY/@@download/ENCFF941JQY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF941JQY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 25ad23034ff96049e33ba9edfc95cf75 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neuronal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM818032,GEO:GSM956010;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neuronal stem cell;ENCODE_cell_slims=stem cell,neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NSC,neuronal stem cell,neural stem cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000047;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Neuronal stem cell (repl. 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR694LBI] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27me3 • BJ NGENCNXITJIJVP • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BJ Histone Show metadata Download track Track metadata identifier NGENCNXITJIJVP data_source ENCODE Download track Download number_of_intervals 57,072 bp_covered 16,336,225 output_type pseudoreplicated peaks genome_build hg38 cell_type BJ biosample_type Cell line biosample_term_id EFO:0002779 tissue_category Connective Tissue encode_experiment_id ENCSR000DQG biological_replicate 2 technical_replicate 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,075,068 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF518XEX.bed.gz processed_file_md5 cb0e2e2fa2b89ba8ce25b45203d10149 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF518XEX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF518XEX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF518XEX/@@download/ENCFF518XEX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF518XEX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 476785b91178e6ddf2926424cc4c53aa data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens BJ;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM945204,UCSC-ENCODE-hg19:wgEncodeEH000424;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2011-02-11,2011-03-17;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BJ;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002779;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Skeletal life_stage Newborn track_name ENCODE BJ (repl. 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DQG] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K27me3 • CD4+ alpha-beta memory T cell NGENCNXIWL55QX • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD4+ alpha-beta memory T cell Histone Show metadata Download track Track metadata identifier NGENCNXIWL55QX data_source ENCODE Download track Download number_of_intervals 290,769 bp_covered 125,507,435 output_type pseudoreplicated peaks genome_build hg38 cell_type CD4+ alpha-beta memory T cell biosample_type Primary cell biosample_term_id CL:0000897 tissue_category Blood encode_experiment_id ENCSR595ROI biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,676,237 downloaded_date 06/12/2022 release_date 05/06/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF834BEV.bed.gz processed_file_md5 b0f3f5bdea9bd8d0a4901bf5ee7d33ce wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF834BEV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF834BEV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF834BEV/@@download/ENCFF834BEV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF834BEV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b9f90cddb47d15385c4fb4af07cd42d1 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 43 years;Reference=NR;External_resources=GEO:GSE177469;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2021-04-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=activated CD4-positive, alpha-beta memory T cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000665;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE CD4+ alpha-beta memory T cell (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR595ROI] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • B cell NGENCNYBMJ4XII • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq B cell Histone Show metadata Download track Track metadata identifier NGENCNYBMJ4XII data_source ENCODE Download track Download number_of_intervals 16,515 bp_covered 4,471,847 output_type pseudoreplicated peaks genome_build hg38 cell_type B cell biosample_type Primary cell biosample_term_id CL:0000236 tissue_category Immune encode_experiment_id ENCSR522EGW biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 255,990 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF508STE.bed.gz processed_file_md5 64763e8994ac34f1a61260f2b33ac8d2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF508STE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF508STE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF508STE/@@download/ENCFF508STE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF508STE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4540c4ad177da4f281f02684f54daca8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens B cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM537638,GEO:GSM537634;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=B cell;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=B-cell,B lymphocyte,B-lymphocyte;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000236;is_hg38_lifted=no;narrowPeak_filter=qValueRaw system_category Lymphatic life_stage Unknown track_name ENCODE B cell (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR522EGW] [Histone ChIP-seq peaks]
H3K27me3 • Middle frontal area BA46 NGENCNYFLA25GF • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Middle frontal area BA46 Histone Show metadata Download track Track metadata identifier NGENCNYFLA25GF data_source ENCODE Download track Download number_of_intervals 56,546 bp_covered 45,012,812 output_type pseudoreplicated peaks genome_build hg38 cell_type Middle frontal area BA46 biosample_type Tissue biosample_term_id UBERON:0006483 tissue_category Brain encode_experiment_id ENCSR157MPY biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,098,956 downloaded_date 06/12/2022 release_date 06/06/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF200HKM.bed.gz processed_file_md5 6e64dc7030888604d3109dbc7c898df9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF200HKM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF200HKM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF200HKM/@@download/ENCFF200HKM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF200HKM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e7d74fbf696576d70e1ece903a2a1915 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens with Alzheimer's disease| dorsolateral prefrontal cortex tissue female adult (89 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RushAD,RegulomeDB_2_2;Life_stage_age=adult 89 years;Reference=NR;External_resources=GEO:GSE209046;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-06-09,2022-06-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=dorsolateral prefrontal cortex;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0006483;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Middle frontal area BA46 (repl. 1) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR157MPY] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • BLaER1 NGENCNYH4CMIV6 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCNYH4CMIV6 data_source ENCODE Download track Download number_of_intervals 63,368 bp_covered 91,355,613 output_type pseudoreplicated peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR337RFQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,504,480 downloaded_date 05/15/2024 release_date 02/16/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF980SGV.bed.gz processed_file_md5 b27aa2a62ba96784f2657337ea66395c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF980SGV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF980SGV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF980SGV/@@download/ENCFF980SGV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF980SGV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 97f161c878b1f0922a9d2e6744a52c44 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 168 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE257306;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR337RFQ] [Histone ChIP-seq peaks]
H3K27me3 • BLaER1 NGENCNZ3AMZ5GQ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCNZ3AMZ5GQ data_source ENCODE Download track Download number_of_intervals 67,130 bp_covered 103,802,257 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR285PDU biological_replicate 1 technical_replicate 1_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,458,443 downloaded_date 06/12/2022 release_date 01/27/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF444NOT.bed.gz processed_file_md5 e510b5e27d53efe76a2ca06fc58427ad wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF444NOT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF444NOT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF444NOT/@@download/ENCFF444NOT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF444NOT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 41a833daa0d31928d4470bb742ba999d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 24 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE256663;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H024H3K27me3X1_peaks.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1) Histone ChIP-seq H3K27me3 peaks (narrowPeak) [Experiment: ENCSR285PDU] [Histone ChIP-seq peaks]
H3K27me3 • Gastrocnemius medialis NGENCNZ3IKYCVJ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Gastrocnemius medialis Histone Show metadata Download track Track metadata identifier NGENCNZ3IKYCVJ data_source ENCODE Download track Download number_of_intervals 3,819 bp_covered 4,056,893 output_type pseudoreplicated peaks genome_build hg38 cell_type Gastrocnemius medialis biosample_type Tissue biosample_term_id UBERON:0011907 tissue_category Skeletal Muscle encode_experiment_id ENCSR453MSI biological_replicate 2 technical_replicate 2_1, 2_2 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 84,672 downloaded_date 06/12/2022 release_date 09/22/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF315KCF.bed.gz processed_file_md5 d232b1a6f8ead995f8d354bf1532d1a2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF315KCF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF315KCF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF315KCF/@@download/ENCFF315KCF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF315KCF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a7e7b76141be9d1607a82c4dec201bfc data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens gastrocnemius medialis tissue female adult (51 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 51 years;Reference=NR;External_resources=GEO:GSE142979;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-09-11,2019-09-06;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=gastrocnemius medialis;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=medial head of gastrocnemius muscle,medial head of gastrocnemius,caput mediale (musculus gastrocnemius),caput mediale musculus gastrocnemii;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0011907;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Gastrocnemius medialis (repl. 2) Histone ChIP-seq H3K27me3 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR453MSI] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27me3 • Common myeloid progenitor cell NGENCNZLAYGDBJ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Common myeloid progenitor cell Histone Show metadata Download track Track metadata identifier NGENCNZLAYGDBJ data_source ENCODE Download track Download number_of_intervals 62,179 bp_covered 68,366,891 output_type replicated peaks genome_build hg38 cell_type Common myeloid progenitor cell biosample_type Primary cell biosample_term_id NCIT:C12552 tissue_category Blood encode_experiment_id ENCSR862NIZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K27me3 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,496,658 downloaded_date 06/12/2022 release_date 03/18/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF192PBD.bed.gz processed_file_md5 b5e2fbbaf0c88cecc91d9949b066721c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF192PBD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF192PBD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF192PBD/@@download/ENCFF192PBD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF192PBD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 69a5dfc4c8dfe61e81cd1e7fe090035d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens common myeloid progenitor, CD34-positive female adult (27 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 27 years;Reference=PMID:32728046;External_resources=GEO:GSM772951,GEO:GSM669945,GEO:GSM621664;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=common myeloid progenitor, CD34-positive;ENCODE_cell_slims=myeloid cell,hematopoietic cell,progenitor cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=common myeloid precursor, CD34-positive;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0001059;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Common myeloid progenitor cell (repl. 1, 2) Histone ChIP-seq H3K27me3 replicated peaks (narrowPeak) [Experiment: ENCSR862NIZ] [Life stage: Adult] [Histone ChIP-seq peaks]