H3K4me1 • Mucosa NGENC2TVDR56QZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mucosa Histone Show metadata Download track Track metadata identifier NGENC2TVDR56QZ data_source ENCODE Download track Download number_of_intervals 109,596 bp_covered 96,551,510 output_type pseudoreplicated peaks genome_build hg38 cell_type Mucosa biosample_type Tissue biosample_term_id UBERON:0000344 tissue_category Digestive encode_experiment_id ENCSR513NFT biological_replicate 1 technical_replicate 1_4 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,630,769 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF324QOX.bed.gz processed_file_md5 acdb1deb097e4daeb42453e5fed251fb wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF324QOX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF324QOX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF324QOX/@@download/ENCFF324QOX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF324QOX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9d58b6ed6731f342f43a88ca3bf9a173 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens duodenal mucosa tissue male adult (59 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 59 years;Reference=PMID:32728046;External_resources=GEO:GSM916017;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=duodenal mucosa;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=mucosa of duodenum,doudenal mucosa,mucous membrane of duodenum,duodenal mucous membrane;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000320;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Mucosa (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR513NFT] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • HEK293 NGENC2UHADU4PI • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HEK293 Histone Show metadata Download track Track metadata identifier NGENC2UHADU4PI data_source ENCODE Download track Download number_of_intervals 46,236 bp_covered 26,097,361 output_type pseudoreplicated peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR000FCG biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 954,053 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF647UVG.bed.gz processed_file_md5 6403c14c38d4ac1656e4ebbad8cc4471 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF647UVG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF647UVG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF647UVG/@@download/ENCFF647UVG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF647UVG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d073033890f3980e2077e725946368ed data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:22951069;External_resources=GEO:GSE174861;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2014-07-07,2011-10-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000FCG] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • Neurosphere NGENC2VVKQKBND • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Neurosphere Histone Show metadata Download track Track metadata identifier NGENC2VVKQKBND data_source ENCODE Download track Download number_of_intervals 209,559 bp_covered 209,172,738 output_type pseudoreplicated peaks genome_build hg38 cell_type Neurosphere biosample_type Stem cell biosample_term_id NCIT:C172261 tissue_category Stem Cell encode_experiment_id ENCSR727TQS biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 5,303,281 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF142MTZ.bed.gz processed_file_md5 93758f948b49b5ba7c8d705af648b583 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF142MTZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF142MTZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF142MTZ/@@download/ENCFF142MTZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF142MTZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 39a18facfb41a77475256c465598bda7 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens neurosphere female embryo (17 weeks) originated from cortex;Lab=Joseph Costello, UCSF;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=embryonic 17 weeks;Reference=PMID:32728046;External_resources=GEO:GSM817230;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=neurosphere;ENCODE_cell_slims=stem cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000427;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Stem Cell life_stage Embryonic track_name ENCODE Neurosphere (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR727TQS] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • Naive thymus-derived CD4+ alpha-beta T cell NGENC2W7FNQ3IZ • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Naive thymus-derived CD4+ alpha-beta T cell Histone Show metadata Download track Track metadata identifier NGENC2W7FNQ3IZ data_source ENCODE Download track Download number_of_intervals 248,623 bp_covered 170,180,843 output_type pseudoreplicated peaks genome_build hg38 cell_type Naive thymus-derived CD4+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000895 tissue_category Blood encode_experiment_id ENCSR217BBP biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 6,214,890 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF909GTN.bed.gz processed_file_md5 30c9e8bca4a9750e39e1456aaf82c07c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF909GTN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF909GTN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF909GTN/@@download/ENCFF909GTN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF909GTN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 72e00432fae697375b48c40f29b3a609 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 43 years;Reference=NR;External_resources=GEO:GSE176728;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2020-08-04;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=naive thymus-derived CD4-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=naive thymus-derived CD4-positive, alpha-beta T lymphocyte,Th0,naive thymus-derived CD4-positive, alpha-beta T-cell,naive thymus-derived CD4-positive, alpha-beta T-lymphocyte,T.4Nve.Sp;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000895;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Naive thymus-derived CD4+ alpha-beta T cell (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR217BBP] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Mid-neurogenesis radial glial cell NGENC2WR43RAX7 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Mid-neurogenesis radial glial cell Histone Show metadata Download track Track metadata identifier NGENC2WR43RAX7 data_source ENCODE Download track Download number_of_intervals 80,669 bp_covered 75,800,395 output_type pseudoreplicated peaks genome_build hg38 cell_type Mid-neurogenesis radial glial cell biosample_type In vitro differentiated cells biosample_term_id CL:0000681 tissue_category Brain encode_experiment_id ENCSR290EHP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,942,097 downloaded_date 06/12/2022 release_date 02/25/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF606WAS.bed.gz processed_file_md5 0c1e6b3ec2fd4e3fbab8964c60ddad7d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF606WAS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF606WAS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF606WAS/@@download/ENCFF606WAS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF606WAS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 610da8141fbfee6c761ce6e343cd427d data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mid-neurogenesis radial glial cells stably expressing HES5 originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE96028;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-20,2015-08-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mid-neurogenesis radial glial cells;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0003830;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Embryonic track_name ENCODE Mid-neurogenesis radial glial cell (repl. 1, 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR290EHP] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • BLaER1 NGENC2X37FM3SI • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENC2X37FM3SI data_source ENCODE Download track Download number_of_intervals 146,188 bp_covered 264,011,081 output_type pseudoreplicated peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR863PSM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,132,069 downloaded_date 05/15/2024 release_date 02/28/2023 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF456UKS.bed.gz processed_file_md5 88416641dbcf2a7949c906c2344549e3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF456UKS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF456UKS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF456UKS/@@download/ENCFF456UKS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF456UKS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 198252f1313421ece156db6491ae31ab data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE257730;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR863PSM] [Histone ChIP-seq peaks]
H3K4me1 • BLaER1 NGENC2XN7GUQDA • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENC2XN7GUQDA data_source ENCODE Download track Download number_of_intervals 197,226 bp_covered 242,581,970 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR659KFN biological_replicate 2 technical_replicate 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,685,044 downloaded_date 06/12/2022 release_date 01/28/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF120QRR.bed.gz processed_file_md5 63c323cd1fa5be7e2189ccf3c740cb9d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF120QRR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF120QRR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF120QRR/@@download/ENCFF120QRR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF120QRR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5407a3f43fc2904f5277bdc4fc7b4d3a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 12 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258679;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H012H3K4me1X2_peaks.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 2) Histone ChIP-seq H3K4me1 peaks (narrowPeak) [Experiment: ENCSR659KFN] [Histone ChIP-seq peaks]
H3K4me1 • HUES48 NGENC2YHFZXIKE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq HUES48 Histone Show metadata Download track Track metadata identifier NGENC2YHFZXIKE data_source ENCODE Download track Download number_of_intervals 172,689 bp_covered 150,477,788 output_type replicated peaks genome_build hg38 cell_type HUES48 biosample_type Cell line biosample_term_id EFO:0007083 tissue_category Embryo encode_experiment_id ENCSR888OSH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,356,199 downloaded_date 06/12/2022 release_date 11/20/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF454IJV.bed.gz processed_file_md5 1431e4c1b0e0a520ed0f3a9fbe650123 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF454IJV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF454IJV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF454IJV/@@download/ENCFF454IJV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF454IJV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 599ee42ae128a8d1c86908f88264a147 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens HUES48;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM669954,GEO:GSM772793;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HUES48;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007083;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE HUES48 (repl. 1, 2) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR888OSH] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • Chorion NGENC2YI7VJBZ7 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Chorion Histone Show metadata Download track Track metadata identifier NGENC2YI7VJBZ7 data_source ENCODE Download track Download number_of_intervals 97,329 bp_covered 47,758,737 output_type pseudoreplicated peaks genome_build hg38 cell_type Chorion biosample_type Tissue biosample_term_id NCIT:C34122 tissue_category Embryo encode_experiment_id ENCSR244MNY biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,992,064 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF478PSO.bed.gz processed_file_md5 884623c5b97f4723bdd00388c6ade273 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF478PSO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF478PSO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF478PSO/@@download/ENCFF478PSO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF478PSO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 46c9939f9244baaa2caa0d1cdcb47c3e data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens chorion tissue female embryo (40 weeks);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=embryonic 40 weeks;Reference=NR;External_resources=NR;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=chorion;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=fetal chorion,embryonic chorion,uterine chorion,chorion (vertebrates),chorion;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0003124;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE Chorion (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR244MNY] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • OCI-LY1 NGENC2YQMWRAMW • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq OCI-LY1 Histone Show metadata Download track Track metadata identifier NGENC2YQMWRAMW data_source ENCODE Download track Download number_of_intervals 71,324 bp_covered 88,100,327 output_type pseudoreplicated peaks genome_build hg38 cell_type OCI-LY1 biosample_type Cell line biosample_term_id EFO:0005907 tissue_category Immune encode_experiment_id ENCSR184QUS biological_replicate 2 technical_replicate 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,895,966 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF308BFK.bed.gz processed_file_md5 19bc7fa02bd109a45567bbdb4be37611 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF308BFK.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF308BFK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF308BFK/@@download/ENCFF308BFK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF308BFK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7dcdb2e0566d057c83161354671cbd32 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens OCI-LY1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 44 years;Reference=PMID:32728046;External_resources=GEO:GSE86684;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=OCI-LY1;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005907;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE OCI-LY1 (repl. 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR184QUS] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • OCI-LY7 NGENC34LJEKMVN • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq OCI-LY7 Histone Show metadata Download track Track metadata identifier NGENC34LJEKMVN data_source ENCODE Download track Download number_of_intervals 70,647 bp_covered 86,555,523 output_type pseudoreplicated peaks genome_build hg38 cell_type OCI-LY7 biosample_type Cell line biosample_term_id EFO:0006711 tissue_category Blood encode_experiment_id ENCSR060WGK biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,862,194 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF355VFJ.bed.gz processed_file_md5 6b059c1451ad228374f6726042162619 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF355VFJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF355VFJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF355VFJ/@@download/ENCFF355VFJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF355VFJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8b15d8bb1276e4a311f8090b71721d19 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens OCI-LY7;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 48 years;Reference=PMID:32728046;External_resources=GEO:GSE86679;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=OCI-LY7;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0006711;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE OCI-LY7 (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR060WGK] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Bipolar neuron NGENC362MTVTEA • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Bipolar neuron Histone Show metadata Download track Track metadata identifier NGENC362MTVTEA data_source ENCODE Download track Download number_of_intervals 203,854 bp_covered 293,248,718 output_type pseudoreplicated peaks genome_build hg38 cell_type Bipolar neuron biosample_type In vitro differentiated cells biosample_term_id CL:0000103 tissue_category Brain encode_experiment_id ENCSR301AEA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 5,819,857 downloaded_date 07/10/2025 release_date 01/21/2023 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF891HRP.bed.gz processed_file_md5 2d55b3c0fdf1891e5b1f780080de59ef wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF891HRP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF891HRP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF891HRP/@@download/ENCFF891HRP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF891HRP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4183fbea80879ed44ea51745e37ceae9 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 _g/mL doxycycline hyclate for 4 days;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE96108;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-04,2015-08-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=bipolar neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000103;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Bipolar neuron (repl. 1, 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR301AEA] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • H1-hESC NGENC3AGBYPBAS • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGENC3AGBYPBAS data_source ENCODE Download track Download number_of_intervals 51,051 bp_covered 18,940,911 output_type pseudoreplicated peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR631RJR biological_replicate 2 technical_replicate 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 901,308 downloaded_date 06/12/2022 release_date 12/10/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF037CNM.bed.gz processed_file_md5 8194dee7da6f5d31568d1b2aaf8667c9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF037CNM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF037CNM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF037CNM/@@download/ENCFF037CNM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF037CNM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3f8c56f7dd92a695fad53c5b3671cfe9 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM537679,GEO:GSM433177;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR631RJR] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • UCSF-4 NGENC3AT4TT6ES • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq UCSF-4 Histone Show metadata Download track Track metadata identifier NGENC3AT4TT6ES data_source ENCODE Download track Download number_of_intervals 118,408 bp_covered 85,022,438 output_type pseudoreplicated peaks genome_build hg38 cell_type UCSF-4 biosample_type Stem cell biosample_term_id EFO:0007116 tissue_category Embryo encode_experiment_id ENCSR615YKN biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,573,466 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF459RSQ.bed.gz processed_file_md5 f07e8f527fa988b8fd2c78fa1913305b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF459RSQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF459RSQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF459RSQ/@@download/ENCFF459RSQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF459RSQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3702ee3329268bda703db70c4fd6db7f data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens UCSF-4;Lab=Joseph Costello, UCSF;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM1127080,GEO:GSM941748;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=UCSF-4;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=UCSF-4;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007116;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE UCSF-4 (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR615YKN] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • Neuron NGENC3CPYDIQCU • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Neuron Histone Show metadata Download track Track metadata identifier NGENC3CPYDIQCU data_source ENCODE Download track Download number_of_intervals 287,682 bp_covered 134,386,865 output_type pseudoreplicated peaks genome_build hg38 cell_type Neuron biosample_type In vitro differentiated cells biosample_term_id CL:0000540 tissue_category Brain encode_experiment_id ENCSR201NXK biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 7,272,803 downloaded_date 05/15/2024 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF705VHY.bed.gz processed_file_md5 5c43217b32c5800f5265cf8277826590 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF705VHY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF705VHY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF705VHY/@@download/ENCFF705VHY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF705VHY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 24536b195271b938c5ce3022685e7aea data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens glutamatergic neuron;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE176605;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-02,2020-08-04;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=glutamatergic neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000679;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Neuron (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR201NXK] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Adrenal gland NGENC3CWPV6SFZ • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Adrenal gland Histone Show metadata Download track Track metadata identifier NGENC3CWPV6SFZ data_source ENCODE Download track Download number_of_intervals 104 bp_covered 47,447 output_type pseudoreplicated peaks genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR455JUO biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,472 downloaded_date 06/12/2022 release_date 11/01/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF796RKT.bed.gz processed_file_md5 a3ed55e11790ef2a4ea388735f8f7fc9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF796RKT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF796RKT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF796RKT/@@download/ENCFF796RKT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF796RKT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f0e4952adb904e3c7a644d7aeb256237 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens adrenal gland tissue male adult (37 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 37 years;Reference=PMID:32728046;External_resources=GEO:GSE101161;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-26,2016-06-30;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=adrenal gland;ENCODE_cell_slims=NR;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=glandula suprarenalis,glandula adrenalis;Analysis_title=ENCODE4 v1.6.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Adult track_name ENCODE Adrenal gland (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR455JUO] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • A549 NGENC3DDZF2CSX • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENC3DDZF2CSX data_source ENCODE Download track Download number_of_intervals 123,116 bp_covered 146,746,473 output_type pseudoreplicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR636PIN biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,333,451 downloaded_date 06/12/2022 release_date 11/13/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF894PAJ.bed.gz processed_file_md5 19b26f75322204fde304d2dcc55f1faf wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF894PAJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF894PAJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF894PAJ/@@download/ENCFF894PAJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF894PAJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c77eab6f59002d08d6df5b735407b06a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91306;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 2, 3) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR636PIN] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Ventricular myocardium NGENC3DHQVYS2T • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Ventricular myocardium Histone Show metadata Download track Track metadata identifier NGENC3DHQVYS2T data_source ENCODE Download track Download number_of_intervals 169,889 bp_covered 263,462,905 output_type replicated peaks genome_build hg38 cell_type Ventricular myocardium biosample_type Tissue biosample_term_id UBERON:0001083 tissue_category Heart encode_experiment_id ENCSR350KJU biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,451,451 downloaded_date 06/12/2022 release_date 04/10/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF486VWH.bed.gz processed_file_md5 8748dd407a27ded554958880c65a52b0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF486VWH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF486VWH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF486VWH/@@download/ENCFF486VWH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF486VWH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7ee0af7a54ecbd6d3009e5df505a90e4 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens left ventricle myocardium inferior tissue male adult (60 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 60 years;Reference=NR;External_resources=GEO:GSE175198;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-06,2021-04-12;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=left ventricle myocardium inferior;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000493;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Ventricular myocardium (repl. 1, 2) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR350KJU] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • A549 NGENC3DWAXD76F • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq A549 Histone Show metadata Download track Track metadata identifier NGENC3DWAXD76F data_source ENCODE Download track Download number_of_intervals 111,451 bp_covered 132,511,420 output_type replicated peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR462JVS biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 3,023,658 downloaded_date 07/10/2025 release_date 12/08/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF883FVA.bed.gz processed_file_md5 77d35751da27db299b2e8f1dc7f51909 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF883FVA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF883FVA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF883FVA/@@download/ENCFF883FVA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF883FVA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8d8b2dc2231702db72dfba26f407ce4b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 7 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91267;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep1_vs_rep3.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 3) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR462JVS] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Myotube NGENC3EJHXJ6V5 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Myotube Histone Show metadata Download track Track metadata identifier NGENC3EJHXJ6V5 data_source ENCODE Download track Download number_of_intervals 82,360 bp_covered 45,493,836 output_type pseudoreplicated peaks genome_build hg38 cell_type Myotube biosample_type In vitro differentiated cells biosample_term_id CL:0002372 tissue_category Skeletal Muscle encode_experiment_id ENCSR000ANX biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,882,699 downloaded_date 06/12/2022 release_date 10/30/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF067BLY.bed.gz processed_file_md5 30a6003d5c4216e9a4585b5e6fb86291 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF067BLY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF067BLY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF067BLY/@@download/ENCFF067BLY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF067BLY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 493953485f80ae36d2391b17b304649a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens myotube originated from skeletal muscle myoblast;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 22 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001005,GEO:GSM733661;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=myotube;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=myotubule,single cell sarcomere;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002372;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Muscular life_stage Adult track_name ENCODE Myotube (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ANX] [Life stage: Adult] [Histone ChIP-seq peaks]