H3K4me1 • Panc1 NGENCHKI3SFIIM • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Panc1 Histone Show metadata Download track Track metadata identifier NGENCHKI3SFIIM data_source ENCODE Download track Download number_of_intervals 54,488 bp_covered 43,699,317 output_type pseudoreplicated peaks genome_build hg38 cell_type Panc1 biosample_type Cell line biosample_term_id EFO:0002713 tissue_category Pancreas encode_experiment_id ENCSR000EXJ biological_replicate 2 technical_replicate 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,184,005 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF660WEO.bed.gz processed_file_md5 c26bdcb9b7fac5aa49e0f34e318fd230 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF660WEO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF660WEO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF660WEO/@@download/ENCFF660WEO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF660WEO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 019cd5f0fb5d89ce5809b27f043c0ba6 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens Panc1;Lab=Peggy Farnham, USC;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 56 years;Reference=PMID:32728046;External_resources=GEO:GSM818827,UCSC-ENCODE-hg19:wgEncodeEH002081;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-07,2011-11-28;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Panc1;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=PANC-1;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002713;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Adult track_name ENCODE Panc1 (repl. 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000EXJ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • CD8+ alpha-beta effector memory cell NGENCHKVJQ5IYW • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD8+ alpha-beta effector memory cell Histone Show metadata Download track Track metadata identifier NGENCHKVJQ5IYW data_source ENCODE Download track Download number_of_intervals 181,846 bp_covered 151,222,523 output_type pseudoreplicated peaks genome_build hg38 cell_type CD8+ alpha-beta effector memory cell biosample_type Primary cell biosample_term_id CL:0000913 tissue_category Blood encode_experiment_id ENCSR179EBA biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 4,854,098 downloaded_date 06/12/2022 release_date 03/13/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF594WGA.bed.gz processed_file_md5 a61536888505f70b7032cd7811aa9516 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF594WGA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF594WGA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF594WGA/@@download/ENCFF594WGA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF594WGA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8e720d3a96be2009c2bc2e926d15563a data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens effector memory CD8-positive, alpha-beta T cell male adult (36 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 36 years;Reference=NR;External_resources=GEO:GSE209128;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-03-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=effector memory CD8-positive, alpha-beta T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=effector memory CD8-positive, alpha-beta T-lymphocyte,effector CD8-positive, alpha-beta memory T lymphocyte,effector memory CD8-positive, alpha-beta T lymphocyte,effector memory CD8-positive, alpha-beta T-cell,effector CD8-positive, alpha-beta memory T cell,effector CD8-positive, alpha-beta memory T-cell,effector CD8-positive, alpha-beta memory T-lymphocyte;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000913;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE CD8+ alpha-beta effector memory cell (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR179EBA] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • BLaER1 NGENCHL34NFCFW • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCHL34NFCFW data_source ENCODE Download track Download number_of_intervals 123,289 bp_covered 231,409,211 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR580GOD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed bed3+1 score file_size 987,253 downloaded_date 06/12/2022 release_date 01/27/2022 date_added_to_filer 11/08/2022 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF868NOF.bed.gz processed_file_md5 996f516e27b37e2ed7e3a74fa33df0dd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF868NOF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ENCFF868NOF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/bed4/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF868NOF/@@download/ENCFF868NOF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF868NOF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b5af4c15199fb0b268dcd7c6cc79ec1b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 36 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE257862;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H036H3K4me1_zerone_merged.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED3+1;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K4me1 peaks (bed3+1 score) [Experiment: ENCSR580GOD] [Histone ChIP-seq peaks]
H3K4me1 • B cell NGENCHLT5UYFFE • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq B cell Histone Show metadata Download track Track metadata identifier NGENCHLT5UYFFE data_source ENCODE Download track Download number_of_intervals 78,747 bp_covered 95,152,646 output_type replicated peaks genome_build hg38 cell_type B cell biosample_type Primary cell biosample_term_id CL:0000236 tissue_category Immune encode_experiment_id ENCSR290YLQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,040,702 downloaded_date 06/12/2022 release_date 10/29/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF497KZC.bed.gz processed_file_md5 22785b66f24e591cc955569f95a06303 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF497KZC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF497KZC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF497KZC/@@download/ENCFF497KZC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF497KZC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3f5e8ebf06f77e1b7341e2cc60d0cd56 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens B cell female adult (27 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 27 years;Reference=PMID:32728046;External_resources=GEO:GSE96030;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-23,2012-08-06;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=B cell;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=B-cell,B lymphocyte,B-lymphocyte;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000236;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Lymphatic life_stage Adult track_name ENCODE B cell (repl. 1, 2) Histone ChIP-seq H3K4me1 replicated peaks (narrowPeak) [Experiment: ENCSR290YLQ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • CD8+ alpha-beta memory cell NGENCHLVKGGJG2 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq CD8+ alpha-beta memory cell Histone Show metadata Download track Track metadata identifier NGENCHLVKGGJG2 data_source ENCODE Download track Download number_of_intervals 183,154 bp_covered 142,940,052 output_type pseudoreplicated peaks genome_build hg38 cell_type CD8+ alpha-beta memory cell biosample_type Primary cell biosample_term_id CL:0000909 tissue_category Blood encode_experiment_id ENCSR231XAP biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 4,809,302 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF196WJI.bed.gz processed_file_md5 91d96820e9d53d75cd39a8e7a8b2e843 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF196WJI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF196WJI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF196WJI/@@download/ENCFF196WJI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF196WJI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 987cd8648ac0beb4416748035aa69fd1 data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens with multiple sclerosis| CD8-positive, alpha-beta memory T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE176765;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-07-30,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=CD8-positive, alpha-beta memory T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=CD8-positive, alpha-beta memory T-lymphocyte,CD8-positive, alpha-beta memory T-cell,CD8-positive, alpha-beta memory T lymphocyte;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000909;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD8+ alpha-beta memory cell (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR231XAP] [Histone ChIP-seq peaks]
H3K4me1 • Peripheral blood mononuclear cell NGENCHOIZYSH2U • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Peripheral blood mononuclear cell Histone Show metadata Download track Track metadata identifier NGENCHOIZYSH2U data_source ENCODE Download track Download number_of_intervals 8,570 bp_covered 4,967,391 output_type pseudoreplicated peaks genome_build hg38 cell_type Peripheral blood mononuclear cell biosample_type Primary cell biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id ENCSR420EWO biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 155,119 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF768QFM.bed.gz processed_file_md5 de6e5088a5102e88ca5337975d67cd8c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF768QFM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF768QFM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF768QFM/@@download/ENCFF768QFM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF768QFM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e15d528a8d92121b8c8ac740c7ef8541 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens peripheral blood mononuclear cell male adult (39 years);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=adult 39 years;Reference=NR;External_resources=NR;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=peripheral blood mononuclear cell;ENCODE_cell_slims=leukocyte,mononuclear cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:2000001;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Peripheral blood mononuclear cell (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR420EWO] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Progenitor cell of endocrine pancreas NGENCHPLCGXONL • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq Progenitor cell of endocrine pancreas Histone Show metadata Download track Track metadata identifier NGENCHPLCGXONL data_source ENCODE Download track Download number_of_intervals 319,350 bp_covered 148,252,962 output_type pseudoreplicated peaks genome_build hg38 cell_type Progenitor cell of endocrine pancreas biosample_type In vitro differentiated cells biosample_term_id CL:0002351 tissue_category Pancreas encode_experiment_id ENCSR112DVZ biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 8,347,062 downloaded_date 06/12/2022 release_date 06/18/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF357YTV.bed.gz processed_file_md5 234cde1b6e6a55d0188dda4fa340501f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF357YTV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF357YTV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF357YTV/@@download/ENCFF357YTV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF357YTV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0d8a6a6a0174f75eb89b33a833f12c6f data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens progenitor cell of endocrine pancreas;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE187030;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-06-24,2021-04-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=progenitor cell of endocrine pancreas;ENCODE_cell_slims=progenitor cell;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=pancreatic islet progenitor cell,pancreatic endocrine progenitor;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002351;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Embryonic track_name ENCODE Progenitor cell of endocrine pancreas (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR112DVZ] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • Epithelial cell NGENCHPTMNDT2D • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Epithelial cell Histone Show metadata Download track Track metadata identifier NGENCHPTMNDT2D data_source ENCODE Download track Download number_of_intervals 178,135 bp_covered 121,884,852 output_type pseudoreplicated peaks genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Breast encode_experiment_id ENCSR521FND biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 4,225,234 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF087HDW.bed.gz processed_file_md5 b73fa9265c8edce4cf56f135a7a6e9a4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF087HDW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF087HDW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF087HDW/@@download/ENCFF087HDW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF087HDW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 46177bd41a974425717508f39972cc6b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens mammary epithelial cell female adult (18 years);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=adult 18 years;Reference=PMID:32728046;External_resources=GEO:GSM613876,GEO:GSM613868;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=mammary epithelial cell;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=exocrine system,integumental system;ENCODE_biosample_term_synonyms=mammary epithelial cell,breast epithelial cell;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002327;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Adult track_name ENCODE Epithelial cell (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR521FND] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Parathyroid adenoma NGENCHQBIGVHVF • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Parathyroid adenoma Histone Show metadata Download track Track metadata identifier NGENCHQBIGVHVF data_source ENCODE Download track Download number_of_intervals 64,933 bp_covered 35,710,872 output_type pseudoreplicated peaks genome_build hg38 cell_type Parathyroid adenoma biosample_type Tissue biosample_term_id Not available tissue_category Endocrine encode_experiment_id ENCSR434NUA biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,435,058 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF667JMP.bed.gz processed_file_md5 63e500fccf48b83f703872106fc6fdc6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF667JMP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF667JMP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF667JMP/@@download/ENCFF667JMP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF667JMP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 11cc03f3205ba57ebf616cb9ff5db49f data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens parathyroid adenoma tissue male adult (62 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 62 years;Reference=NR;External_resources=NR;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-12-01;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=parathyroid adenoma;ENCODE_cell_slims=NR;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0001226;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Adult track_name ENCODE Parathyroid adenoma (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR434NUA] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Aorta NGENCHQY6R4DAG • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Aorta Histone Show metadata Download track Track metadata identifier NGENCHQY6R4DAG data_source ENCODE Download track Download number_of_intervals 116,007 bp_covered 80,749,153 output_type pseudoreplicated peaks genome_build hg38 cell_type Aorta biosample_type Tissue biosample_term_id UBERON:0000947 tissue_category Blood Vessel encode_experiment_id ENCSR707AEW biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,691,740 downloaded_date 06/12/2022 release_date 09/23/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF649XPB.bed.gz processed_file_md5 d3397f98d258f96f0c0f4d77400e1f36 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF649XPB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF649XPB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF649XPB/@@download/ENCFF649XPB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF649XPB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1aa0c69a29334db0ec4d56101b7a5bca data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens ascending aorta tissue female adult (53 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE101257;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2017-03-22,2016-11-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=ascending aorta;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=ascending thoracic aorta,pars ascendens aortae;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001496;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE Aorta (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR707AEW] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • RWPE2 NGENCHRF4KV4GV • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq RWPE2 Histone Show metadata Download track Track metadata identifier NGENCHRF4KV4GV data_source ENCODE Download track Download number_of_intervals 106,229 bp_covered 101,989,229 output_type pseudoreplicated peaks genome_build hg38 cell_type RWPE2 biosample_type Cell line biosample_term_id EFO:0007610 tissue_category Male Reproductive encode_experiment_id ENCSR161GUA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,965,029 downloaded_date 06/12/2022 release_date 08/25/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF961ILD.bed.gz processed_file_md5 1e14be704fc73f5c114d7dbefe22665b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF961ILD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF961ILD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF961ILD/@@download/ENCFF961ILD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF961ILD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 76d52a2d7ec1da3754298b397c8ff72a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens RWPE2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE175026;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-04-06,2020-08-28;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=RWPE2;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=CRL-11610,RWPE_2,RWPE 2;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007610;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Unknown track_name ENCODE RWPE2 (repl. 1, 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR161GUA] [Histone ChIP-seq peaks]
H3K4me1 • CD4+ alpha-beta memory T cell NGENCHU545DP7X • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq CD4+ alpha-beta memory T cell Histone Show metadata Download track Track metadata identifier NGENCHU545DP7X data_source ENCODE Download track Download number_of_intervals 68,355 bp_covered 70,331,037 output_type pseudoreplicated peaks genome_build hg38 cell_type CD4+ alpha-beta memory T cell biosample_type Primary cell biosample_term_id CL:0000897 tissue_category Blood encode_experiment_id ENCSR887ESB biological_replicate 1 technical_replicate 1_4 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,672,280 downloaded_date 06/12/2022 release_date 01/29/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF770QRG.bed.gz processed_file_md5 1cdb7b1f0fd8011e2079ce902cd25aa2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF770QRG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF770QRG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF770QRG/@@download/ENCFF770QRG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF770QRG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 081f4c3fe4b31f32044e6b6eec800c61 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD4-positive, alpha-beta memory T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM772924,GEO:GSM772884;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=false;ENCODE_biosample_term_name=CD4-positive, alpha-beta memory T cell;ENCODE_cell_slims=T cell,leukocyte,CD4+ T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=CD4-positive, alpha-beta memory T lymphocyte,CD4-positive, alpha-beta memory T-lymphocyte,CD4-positive, alpha-beta memory T-cell;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000897;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD4+ alpha-beta memory T cell (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR887ESB] [Histone ChIP-seq peaks]
H3K4me1 • Lower motor neurons NGENCHVO3MUQQO • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Lower motor neurons Histone Show metadata Download track Track metadata identifier NGENCHVO3MUQQO data_source ENCODE Download track Download number_of_intervals 115,046 bp_covered 78,795,484 output_type pseudoreplicated peaks genome_build hg38 cell_type Lower motor neurons biosample_type In vitro differentiated cells biosample_term_id CL:0000100 tissue_category Brain encode_experiment_id ENCSR698HPK biological_replicate 2 technical_replicate 2_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,816,018 downloaded_date 06/12/2022 release_date 02/09/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF485JPO.bed.gz processed_file_md5 e12a8a9fff5125d7389b9d5bc5f89529 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF485JPO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF485JPO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF485JPO/@@download/ENCFF485JPO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF485JPO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d2674e9a8c58c3a14345bc33e2f123e5 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens from a donor with amyotrophic lateral sclerosis| motor neuron;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 55 years;Reference=PMID:35045337;External_resources=GEO:GSE187703;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-08-24,2021-12-15;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=motor neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=motoneuron;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000100;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Lower motor neurons (repl. 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR698HPK] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • H9 NGENCI35E7SNUR • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGENCI35E7SNUR data_source ENCODE Download track Download number_of_intervals 323,903 bp_covered 204,405,170 output_type replicated peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id ENCSR419UJI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 9,495,927 downloaded_date 06/12/2022 release_date 05/12/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF698RCY.bed.gz processed_file_md5 d9af49cc8161f2d1583fad571f38cba6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF698RCY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF698RCY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF698RCY/@@download/ENCFF698RCY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF698RCY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3fc5d7c24abca1db5ed8f64f5bc7f17a data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 replicated peaks track_description version=2024;Biosample_summary=Homo sapiens H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE177193;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-24,2020-09-08;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H9;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 1_2, 2_1, 2_2, 3_1, 3_2;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Embryo life_stage Embryonic track_name ENCODE H9 (repl. 1, 2) Mint-ChIP-seq H3K4me1-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR419UJI] [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K4me1 • Liver lobe NGENCI4U723NG2 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Liver lobe Histone Show metadata Download track Track metadata identifier NGENCI4U723NG2 data_source ENCODE Download track Download number_of_intervals 83 bp_covered 23,551 output_type pseudoreplicated peaks genome_build hg38 cell_type Liver lobe biosample_type Tissue biosample_term_id UBERON:0001113 tissue_category Liver encode_experiment_id ENCSR489DUV biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,293 downloaded_date 06/12/2022 release_date 10/30/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF415TDO.bed.gz processed_file_md5 e47c797298549f80e0323352ddb930dd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF415TDO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF415TDO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF415TDO/@@download/ENCFF415TDO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF415TDO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5907dfa543d2d6394260890260ad042a data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens right lobe of liver tissue female adult (53 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE101186;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-27,2016-11-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=right lobe of liver;ENCODE_cell_slims=NR;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=right liver lobe,lobus hepaticus dexter,liver right lobe;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001114;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Liver lobe (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR489DUV] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Sigmoid colon NGENCI52OWYGZX • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Sigmoid colon Histone Show metadata Download track Track metadata identifier NGENCI52OWYGZX data_source ENCODE Download track Download number_of_intervals 71,498 bp_covered 23,141,213 output_type pseudoreplicated peaks genome_build hg38 cell_type Sigmoid colon biosample_type Tissue biosample_term_id UBERON:0001159 tissue_category Digestive encode_experiment_id ENCSR782OZZ biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 1,544,050 downloaded_date 06/12/2022 release_date 11/12/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF388RSU.bed.gz processed_file_md5 faf48ffd2d516f96a096aaafe1f06fb2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF388RSU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF388RSU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF388RSU/@@download/ENCFF388RSU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF388RSU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5c0f5f4a65f34f3e6fe5ebf853ec26b2 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens sigmoid colon tissue male adult (34 years);Lab=Bing Ren, UCSD;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 34 years;Reference=PMID:32728046;External_resources=GEO:GSM956023;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=sigmoid colon;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001159;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Digestive life_stage Adult track_name ENCODE Sigmoid colon (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR782OZZ] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • Lower motor neurons NGENCI5W4OOHT6 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq Lower motor neurons Histone Show metadata Download track Track metadata identifier NGENCI5W4OOHT6 data_source ENCODE Download track Download number_of_intervals 93,034 bp_covered 65,953,196 output_type pseudoreplicated peaks genome_build hg38 cell_type Lower motor neurons biosample_type In vitro differentiated cells biosample_term_id CL:0000100 tissue_category Brain encode_experiment_id ENCSR778FKK biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,392,279 downloaded_date 06/12/2022 release_date 02/09/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF189VXE.bed.gz processed_file_md5 da6d6bbb69a443d7b55ffe935bbc111e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF189VXE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF189VXE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF189VXE/@@download/ENCFF189VXE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF189VXE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 181ccae5514697b2f1b592f144ba446c data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens from a donor with amyotrophic lateral sclerosis| motor neuron;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:35045337;External_resources=GEO:GSE187929;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-08-24,2021-12-15;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=motor neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=motoneuron;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000100;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Adult track_name ENCODE Lower motor neurons (repl. 1) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR778FKK] [Life stage: Adult] [Histone ChIP-seq peaks]
H3K4me1 • HFFc6 NGENCI6FLG6ZN4 • ENCODE22955616 | 41168159 | 31713622 Mint-ChIP-seq HFFc6 Histone Show metadata Download track Track metadata identifier NGENCI6FLG6ZN4 data_source ENCODE Download track Download number_of_intervals 192,281 bp_covered 260,036,803 output_type pseudoreplicated peaks genome_build hg38 cell_type HFFc6 biosample_type Cell line biosample_term_id EFO:0009318 tissue_category Male Reproductive encode_experiment_id ENCSR340XKM biological_replicate 1 technical_replicate 1_1, 1_2 antibody H3K4me1 assay Mint-ChIP-seq file_format bed narrowPeak file_size 5,689,990 downloaded_date 06/12/2022 release_date 05/05/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF620SMD.bed.gz processed_file_md5 58bd0f3ea98b87eb2009b4937b8f9a52 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF620SMD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF620SMD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF620SMD/@@download/ENCFF620SMD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF620SMD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4132608ba5fc78422b23a3c0fe7c80eb data_category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens HFFc6;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=newborn 0 years;Reference=NR;External_resources=GEO:GSE177189;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-07-30,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HFFc6;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=HFF-hTERT clone 6;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009318;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Reproductive life_stage Newborn track_name ENCODE HFFc6 (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR340XKM] [Life stage: Newborn] [Histone ChIP-seq peaks]
H3K4me1 • CD8+ alpha-beta memory cell NGENCIA37YJZF3 • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq CD8+ alpha-beta memory cell Histone Show metadata Download track Track metadata identifier NGENCIA37YJZF3 data_source ENCODE Download track Download number_of_intervals 78,150 bp_covered 97,215,187 output_type pseudoreplicated peaks genome_build hg38 cell_type CD8+ alpha-beta memory cell biosample_type Primary cell biosample_term_id CL:0000909 tissue_category Blood encode_experiment_id ENCSR372MTE biological_replicate 1, 2 technical_replicate 1_3, 2_3 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 2,041,830 downloaded_date 06/12/2022 release_date 01/30/2021 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF809IFW.bed.gz processed_file_md5 d781b221f2ed87d9524d1c128170c6e1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF809IFW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF809IFW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF809IFW/@@download/ENCFF809IFW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF809IFW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ebc86b9071bcd3a13914b21d916b2ae0 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks track_description version=2024;Biosample_summary=Homo sapiens CD8-positive, alpha-beta memory T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM772933,GEO:GSM772873;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=NR;ENCODE_preferred_default=true;ENCODE_biosample_term_name=CD8-positive, alpha-beta memory T cell;ENCODE_cell_slims=T cell,CD8+ T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=CD8-positive, alpha-beta memory T-lymphocyte,CD8-positive, alpha-beta memory T-cell,CD8-positive, alpha-beta memory T lymphocyte;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000909;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE CD8+ alpha-beta memory cell (repl. 1, 2) Histone ChIP-seq H3K4me1 pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR372MTE] [Histone ChIP-seq peaks]
H3K4me1 • BLaER1 NGENCIA6VOJMWP • ENCODE22955616 | 41168159 | 31713622 Histone ChIP-seq BLaER1 Histone Show metadata Download track Track metadata identifier NGENCIA6VOJMWP data_source ENCODE Download track Download number_of_intervals 214,128 bp_covered 262,042,537 output_type peaks genome_build hg38 cell_type BLaER1 biosample_type Cell line biosample_term_id EFO:0030018 tissue_category Blood encode_experiment_id ENCSR747ZAI biological_replicate 1 technical_replicate 1_1 antibody H3K4me1 assay Histone ChIP-seq file_format bed narrowPeak file_size 5,010,548 downloaded_date 06/12/2022 release_date 01/27/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF294JDO.bed.gz processed_file_md5 e5b63ed76c79bf98851fa7ba87511b48 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF294JDO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF294JDO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF294JDO/@@download/ENCFF294JDO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF294JDO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 78d90e812e1ac2750e2a344a5dc039e1 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 peaks track_description version=2024;Biosample_summary=Homo sapiens BLaER1 6 hours after the sample was treated with 100 nM 17_-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE258313;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=H006H3K4me1X1_peaks.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=BLaER1;ENCODE_cell_slims=NR;ENCODE_system_slims=immune system,skeletal system;ENCODE_biosample_term_synonyms=B cell Leukemia C/EBPalphaER clone 1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://filer2.niagads.org/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0030018;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Cardiovascular life_stage Unknown track_name ENCODE BLaER1 (repl. 1) Histone ChIP-seq H3K4me1 peaks (narrowPeak) [Experiment: ENCSR747ZAI] [Histone ChIP-seq peaks]