consolidated • Smooth muscle tissue NGEPMLDUCVKD22 • EpiMap Enhancers33536621 ChromHMM Smooth muscle tissue Enhancer Show metadata Download track Track metadata identifier NGEPMLDUCVKD22 data_source EpiMap_Enhancers Download track Download number_of_intervals 109,409 bp_covered 66,922,600 output_type enhancer chromatin states genome_build hg38 cell_type Smooth muscle tissue biosample_type Tissue biosample_term_id UBERON:0001135 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,027,428 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01660_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 2cd65c8066caf1589cb0b7001c03e3f0 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01660_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01660_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01660_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01660_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01660_18_CALLS_segments.bed.gz raw_file_md5 bb95e07f1cd420067a1d4128b38817ae data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=stomach smooth muscle male adult (59 years);tissue_of_origin=Stomach;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01660;extended_md.donor.ids=ENCDO884GGM;extended_md.collated.donors=ENCDO884GGM;extended_md.accession=ENCSR168PQI,ENCSR217CEY,ENCSR083ZUY,ENCSR036AQX,ENCSR339PLH;extended_md.biosample.ids=ENCBS554CVR;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=59;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap_Enhancers Smooth muscle tissue ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • GM19240 NGEPMLDUUXVK2R • EpiMap Enhancers33536621 ChromHMM GM19240 Enhancer Show metadata Download track Track metadata identifier NGEPMLDUUXVK2R data_source EpiMap_Enhancers Download track Download number_of_intervals 136,101 bp_covered 108,430,400 output_type enhancer chromatin states genome_build hg38 cell_type GM19240 biosample_type Cell line biosample_term_id EFO:0002790 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,271,550 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00473_ENCODE_Enh_hg38.bed.gz processed_file_md5 a89211ebb3029c2cf8f0be86d5eb946a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00473_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00473_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00473_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00473_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00473_18_CALLS_segments.bed.gz raw_file_md5 3ed5b02287ef1eb8245a3b9f49770e25 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=GM19240;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00473;extended_md.donor.ids=ENCDO000ACN;extended_md.collated.donors=ENCDO000ACN;extended_md.accession=ENCSR000EJL;extended_md.biosample.ids=ENCBS510ENC;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0002790;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap_Enhancers GM19240 ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Adipose NGEPMLE7JV5DBG • EpiMap Enhancers33536621 ChromHMM Adipose Enhancer Show metadata Download track Track metadata identifier NGEPMLE7JV5DBG data_source EpiMap_Enhancers Download track Download number_of_intervals 198,988 bp_covered 142,905,000 output_type enhancer chromatin states genome_build hg38 cell_type Adipose biosample_type Tissue biosample_term_id NCIT:C12472 tissue_category Adipose encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,825,852 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01666_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 febf8becb47acb8a57012f0c3ecbb4cb wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01666_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01666_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01666_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01666_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01666_18_CALLS_segments.bed.gz raw_file_md5 6d6c5ecf69918332413ac2fa67caa571 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=subcutaneous abdominal adipose tissue nuclear fraction female adult (41 year);tissue_of_origin=Subcutaneous abdominal;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01666;extended_md.donor.ids=ENCDO535TMW;extended_md.collated.donors=ENCDO535TMW;extended_md.accession=ENCSR152UWC,ENCSR501FTL,ENCSR240LEQ,ENCSR214JUK,ENCSR213APK,ENCSR598AGY;extended_md.biosample.ids=ENCBS726IHU;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=41;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name EpiMap_Enhancers Adipose ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • AG08395 NGEPMLEQDP4BMW • EpiMap33536621 ChromHMM AG08395 Chromatin states Show metadata Download track Track metadata identifier NGEPMLEQDP4BMW data_source EpiMap Download track Download number_of_intervals 558,673 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type AG08395 biosample_type Cell line biosample_term_id CLO:0033911 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,459,101 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00063_ENCODE_All_hg38.bed.gz processed_file_md5 c55e53db186f87c5fdb283fe71d04ff0 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00063_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00063_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00063_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00063_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00063_18_CALLS_segments.bed.gz raw_file_md5 acec9ad665247071a7a374ce5e66ef34 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=AG08395;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00063;extended_md.donor.ids=ENCDO016AAA;extended_md.collated.donors=ENCDO016AAA;extended_md.accession=ENCSR000EIV;extended_md.biosample.ids=ENCBS287AAA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=85;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name EpiMap AG08395 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • 22Rv1 NGEPMLEYGNMX24 • EpiMap Enhancers33536621 ChromHMM 22Rv1 Enhancer Show metadata Download track Track metadata identifier NGEPMLEYGNMX24 data_source EpiMap_Enhancers Download track Download number_of_intervals 71,135 bp_covered 54,300,000 output_type enhancer chromatin states genome_build hg38 cell_type 22Rv1 biosample_type Cell line biosample_term_id EFO:0002095 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 680,189 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 08/27/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00002_ENCODE_Enh_hg38.bed.gz processed_file_md5 285d7201bf3e16ffc3107a7066154333 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00002_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00002_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00002_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00002_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00002_18_CALLS_segments.bed.gz raw_file_md5 cffc0fb14608362fdafd41a1f81fe871 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=22Rv1 treated with 10 nM 17?-hydroxy-5?-androstan-3-one for 4 hours;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00002;extended_md.donor.ids=ENCDO719HIY;extended_md.collated.donors=ENCDO719HIY;extended_md.accession=ENCSR777CQW;extended_md.biosample.ids=ENCBS070BKF,ENCBS626QQL;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0002095;is_hg38_lifted=no system_category Reproductive life_stage Unknown track_name EpiMap_Enhancers 22Rv1 ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Endothelial cell NGEPMLFEUMHWZM • EpiMap Enhancers33536621 ChromHMM Endothelial cell Enhancer Show metadata Download track Track metadata identifier NGEPMLFEUMHWZM data_source EpiMap_Enhancers Download track Download number_of_intervals 114,227 bp_covered 81,261,400 output_type enhancer chromatin states genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Immune Organ encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,073,498 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00264_ENCODE_Enh_hg38.bed.gz processed_file_md5 3483d5cdcce7054a3fbcd3c0e550d13c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00264_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00264_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00264_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00264_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00264_18_CALLS_segments.bed.gz raw_file_md5 d10dbfae73badbd475bfaf9382b1b895 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=dermis microvascular lymphatic vessel endothelial cell male;tissue_of_origin=Dermis microvascular lymphatic vessel;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00264;extended_md.donor.ids=ENCDO243AAA;extended_md.collated.donors=ENCDO243AAA;extended_md.accession=ENCSR000EOB;extended_md.biosample.ids=ENCBS316AAA,ENCBS815MJP;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Lymphatic life_stage Unknown track_name EpiMap_Enhancers Endothelial cell ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Midbrain NGEPMLFIEX3ZJ3 • EpiMap Enhancers33536621 ChromHMM Midbrain Enhancer Show metadata Download track Track metadata identifier NGEPMLFIEX3ZJ3 data_source EpiMap_Enhancers Download track Download number_of_intervals 102,992 bp_covered 75,352,200 output_type enhancer chromatin states genome_build hg38 cell_type Midbrain biosample_type Tissue biosample_term_id UBERON:0001891 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 976,826 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01270_ENCODE_Enh_hg38.bed.gz processed_file_md5 1e12a7962124d2f5b27e93394044cacd wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01270_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01270_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01270_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01270_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01270_18_CALLS_segments.bed.gz raw_file_md5 f7350ce3d6436e4a5728859a9d59ee3f data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=midbrain male adult (78 years) and male adult (84 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01270;extended_md.donor.ids=ENCDO240JUB,ENCDO317XRR;extended_md.collated.donors=ENCDO240JUB,ENCDO317XRR;extended_md.accession=ENCSR706IDL;extended_md.biosample.ids=ENCBS278TPS,ENCBS804RUL;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=84,78;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=UBERON:0001891;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap_Enhancers Midbrain ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Epithelial cell NGEPMLFSVOPXXB • EpiMap33536621 ChromHMM Epithelial cell Chromatin states Show metadata Download track Track metadata identifier NGEPMLFSVOPXXB data_source EpiMap Download track Download number_of_intervals 493,320 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,797,563 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01491_ENCODE_All_hg38.bed.gz processed_file_md5 40ecd54c87ba403c2bc2fa81cd0dfc9a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01491_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01491_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01491_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01491_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01491_18_CALLS_segments.bed.gz raw_file_md5 8375fc33f449166f3c683140ae3a3a96 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=renal cortical epithelial cell;tissue_of_origin=Renal cortical;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01491;extended_md.donor.ids=ENCDO098AAA;extended_md.collated.donors=ENCDO098AAA;extended_md.accession=ENCSR000EOK;extended_md.biosample.ids=ENCBS286JKJ,ENCBS394ENC;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Unknown track_name EpiMap Epithelial cell ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Brain NGEPMLGGKELDFD • EpiMap33536621 ChromHMM Brain Chromatin states Show metadata Download track Track metadata identifier NGEPMLGGKELDFD data_source EpiMap Download track Download number_of_intervals 463,476 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Brain biosample_type Tissue biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,529,614 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00125_Roadmap_2021_All_hg38.bed.gz processed_file_md5 5ec262fd1f6d3ea8c69d0bd95d97ad95 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00125_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00125_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00125_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00125_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00125_18_CALLS_segments.bed.gz raw_file_md5 14a7b7b042ec2387e2c9bb7b1deb9174 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=brain embryo (112 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00125;extended_md.donor.ids=ENCDO307OVZ;extended_md.collated.donors=ENCDO307OVZ;extended_md.accession=ENCSR118WIQ;extended_md.biosample.ids=ENCBS733PYV;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=112;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Embryonic track_name EpiMap Brain ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • T-cell NGEPMLHOWM73NS • EpiMap33536621 ChromHMM T-cell Chromatin states Show metadata Download track Track metadata identifier NGEPMLHOWM73NS data_source EpiMap Download track Download number_of_intervals 499,232 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type T-cell biosample_type Primary cell biosample_term_id CL:0000084 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,882,284 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01689_Roadmap_2015_All_hg38.bed.gz processed_file_md5 7fc83bf24bb58164d02aed912bb3d773 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01689_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01689_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01689_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01689_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01689_18_CALLS_segments.bed.gz raw_file_md5 aad9e89a24c8af06b255503f9358067c data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=T-cell male adult (37 years);tissue_of_origin=Cord blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01689;extended_md.donor.ids=ENCDO028NGF;extended_md.collated.donors=ENCDO028NGF;extended_md.accession=ENCSR395YXN,ENCSR222QLW,ENCSR920EOT,ENCSR366YTD;extended_md.biosample.ids=ENCBS495KDC;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=37;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap T-cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • RWPE2 NGEPMLI4BVQVVE • EpiMap33536621 ChromHMM RWPE2 Chromatin states Show metadata Download track Track metadata identifier NGEPMLI4BVQVVE data_source EpiMap Download track Download number_of_intervals 460,364 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type RWPE2 biosample_type Cell line biosample_term_id EFO:0007610 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,490,926 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01539_ENCODE_All_hg38.bed.gz processed_file_md5 d205a307b2e50c8dc1bc8357468083d3 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01539_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01539_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01539_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01539_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01539_18_CALLS_segments.bed.gz raw_file_md5 e8923a2274bc57e7f0341a47470d9637 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=RWPE2;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01539;extended_md.donor.ids=ENCDO000ADM;extended_md.collated.donors=ENCDO000ADM;extended_md.accession=ENCSR987PNT;extended_md.biosample.ids=ENCBS942OEI,ENCBS796LYI;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=54;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0007610;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap RWPE2 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Renal cortex interstitium NGEPMLIK42LONM • EpiMap Enhancers33536621 ChromHMM Renal cortex interstitium Enhancer Show metadata Download track Track metadata identifier NGEPMLIK42LONM data_source EpiMap_Enhancers Download track Download number_of_intervals 80,671 bp_covered 54,671,600 output_type enhancer chromatin states genome_build hg38 cell_type Renal cortex interstitium biosample_type Tissue biosample_term_id UBERON:0005270 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 771,393 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01532_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 a81d125c8fe851d4a65d1fbf1c0e20f9 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01532_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01532_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01532_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01532_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01532_18_CALLS_segments.bed.gz raw_file_md5 61b8d95443aca21a74335c1e08c2a2f1 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=right renal cortex interstitium male embryo (120 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01532;extended_md.donor.ids=ENCDO327QNA;extended_md.collated.donors=ENCDO327QNA;extended_md.accession=ENCSR887BNC;extended_md.biosample.ids=ENCBS183TBX;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=120;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Renal cortex interstitium ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Astrocyte NGEPMLIX7EMY7K • EpiMap33536621 ChromHMM Astrocyte Chromatin states Show metadata Download track Track metadata identifier NGEPMLIX7EMY7K data_source EpiMap Download track Download number_of_intervals 494,549 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Astrocyte biosample_type Primary cell biosample_term_id CL:0000127 tissue_category Nervous encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,815,955 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00092_ENCODE_All_hg38.bed.gz processed_file_md5 7530f31e7f698ad6276819afd1b3a79d wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00092_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00092_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00092_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00092_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00092_18_CALLS_segments.bed.gz raw_file_md5 3e461f168ea6fe4010f2319f7fd48053 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=astrocyte of the spinal cord;tissue_of_origin=Spinal cord;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00092;extended_md.donor.ids=ENCDO224AAA;extended_md.collated.donors=ENCDO224AAA;extended_md.accession=ENCSR000ENB,ENCSR000DSW;extended_md.biosample.ids=ENCBS302AAA,ENCBS995OME,ENCBS995OME,ENCBS302AAA;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Unknown track_name EpiMap Astrocyte ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Adipose NGEPMLJ47JH5AX • EpiMap33536621 ChromHMM Adipose Chromatin states Show metadata Download track Track metadata identifier NGEPMLJ47JH5AX data_source EpiMap Download track Download number_of_intervals 312,034 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Adipose biosample_type Tissue biosample_term_id NCIT:C12472 tissue_category Adipose encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,009,826 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00043_Roadmap_2021_All_hg38.bed.gz processed_file_md5 18aa5572c55dc944813bbb7eb7b678f8 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00043_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00043_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00043_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00043_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00043_18_CALLS_segments.bed.gz raw_file_md5 fdc5270b5d5e45215fb95d6d08878085 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=adipose tissue male adult (34 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00043;extended_md.donor.ids=ENCDO058AAA;extended_md.collated.donors=ENCDO058AAA;extended_md.accession=ENCSR082SHT;extended_md.biosample.ids=ENCBS628VEX;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=34;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name EpiMap Adipose ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Heart NGEPMLJJXNL66X • EpiMap Enhancers33536621 ChromHMM Heart Enhancer Show metadata Download track Track metadata identifier NGEPMLJJXNL66X data_source EpiMap_Enhancers Download track Download number_of_intervals 203,512 bp_covered 165,865,800 output_type enhancer chromatin states genome_build hg38 cell_type Heart biosample_type Tissue biosample_term_id NCIT:C12727 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,854,282 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00501_ENCODE_Enh_hg38.bed.gz processed_file_md5 44a2169a852248a38d6d21631a187588 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00501_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00501_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00501_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00501_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00501_18_CALLS_segments.bed.gz raw_file_md5 4eef01566fafa7b4cb3b72eb4d9b69a3 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=heart female embryo (116 days) and female embryo (98 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00501;extended_md.donor.ids=ENCDO712ZBZ,ENCDO298NZG;extended_md.collated.donors=ENCDO712ZBZ,ENCDO298NZG;extended_md.accession=ENCSR749BWV;extended_md.biosample.ids=ENCBS996MDU,ENCBS320XNN;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=98116;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name EpiMap_Enhancers Heart ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Ovary NGEPMLJRY2PEW4 • EpiMap Enhancers33536621 ChromHMM Ovary Enhancer Show metadata Download track Track metadata identifier NGEPMLJRY2PEW4 data_source EpiMap_Enhancers Download track Download number_of_intervals 149,601 bp_covered 96,284,400 output_type enhancer chromatin states genome_build hg38 cell_type Ovary biosample_type Tissue biosample_term_id NCIT:C12404 tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,382,151 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01399_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 2fd4d54f55bb4ea10c57f6f744217a9b wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01399_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01399_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01399_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01399_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01399_18_CALLS_segments.bed.gz raw_file_md5 17bb795426e9b16da1976711d6c48973 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=ovary female adult (30 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01399;extended_md.donor.ids=ENCDO424HVB;extended_md.collated.donors=ENCDO424HVB;extended_md.accession=ENCSR712PYJ,ENCSR113AFY,ENCSR139TLA,ENCSR956UFV,ENCSR659MYS,ENCSR268JQE,ENCSR037SNV;extended_md.biosample.ids=ENCBS341OKA;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=30;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap_Enhancers Ovary ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Coronary artery NGEPMLK2LHH26K • EpiMap Enhancers33536621 ChromHMM Coronary artery Enhancer Show metadata Download track Track metadata identifier NGEPMLK2LHH26K data_source EpiMap_Enhancers Download track Download number_of_intervals 50,798 bp_covered 57,495,600 output_type enhancer chromatin states genome_build hg38 cell_type Coronary artery biosample_type Tissue biosample_term_id UBERON:0001621 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 482,465 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00242_ENCODE_Enh_hg38.bed.gz processed_file_md5 6f4b6a1ede45aade0007549ec02ad3bb wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00242_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00242_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00242_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00242_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00242_18_CALLS_segments.bed.gz raw_file_md5 1daa33f8f223923eecbc9128ba4ebd10 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=coronary artery female adult (51 year);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00242;extended_md.donor.ids=ENCDO271OUW;extended_md.collated.donors=ENCDO271OUW;extended_md.accession=ENCSR999TSD,ENCSR584AXZ;extended_md.biosample.ids=ENCBS702KSL,ENCBS533FWX;extended_md.assay=ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=51;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap_Enhancers Coronary artery ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Epidermal keratinocyte NGEPMLKHGLWZCS • EpiMap Enhancers33536621 ChromHMM Epidermal keratinocyte Enhancer Show metadata Download track Track metadata identifier NGEPMLKHGLWZCS data_source EpiMap_Enhancers Download track Download number_of_intervals 182,410 bp_covered 114,285,600 output_type enhancer chromatin states genome_build hg38 cell_type Epidermal keratinocyte biosample_type Primary cell biosample_term_id CL:4052061 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,673,441 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01071_ENCODE_2012_Enh_hg38.bed.gz processed_file_md5 c864aa9d2500640c61add856eba04616 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01071_ENCODE_2012_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01071_ENCODE_2012_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01071_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01071_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01071_18_CALLS_segments.bed.gz raw_file_md5 28ac172907449ae83cd12a090830d43e data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=keratinocyte male;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01071;extended_md.donor.ids=ENCDO303AAA;extended_md.collated.donors=ENCDO303AAA;extended_md.accession=ENCSR000ALN;extended_md.biosample.ids=ENCBS650AAA;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name EpiMap_Enhancers Epidermal keratinocyte ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • HT-29 NGEPMLLC6XRROH • EpiMap Enhancers33536621 ChromHMM HT-29 Enhancer Show metadata Download track Track metadata identifier NGEPMLLC6XRROH data_source EpiMap_Enhancers Download track Download number_of_intervals 94,034 bp_covered 69,227,600 output_type enhancer chromatin states genome_build hg38 cell_type HT-29 biosample_type Cell line biosample_term_id EFO:0001193 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 879,111 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00708_ENCODE_Enh_hg38.bed.gz processed_file_md5 92c47c47ee33e977edcc71771f291e78 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00708_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00708_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00708_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00708_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00708_18_CALLS_segments.bed.gz raw_file_md5 dc1e7fb652581a1dc0ff6e4bfd56b43d data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=HT-29;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00708;extended_md.donor.ids=ENCDO347AAA;extended_md.collated.donors=ENCDO347AAA;extended_md.accession=ENCSR814KRX;extended_md.biosample.ids=ENCBS814TLB,ENCBS668UDT,ENCBS914HXH,ENCBS836FPI;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=44;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0001193;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap_Enhancers HT-29 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Peyers patch NGEPMLLMQWT7XR • EpiMap Enhancers33536621 ChromHMM Peyers patch Enhancer Show metadata Download track Track metadata identifier NGEPMLLMQWT7XR data_source EpiMap_Enhancers Download track Download number_of_intervals 106,297 bp_covered 78,387,800 output_type enhancer chromatin states genome_build hg38 cell_type Peyers patch biosample_type Tissue biosample_term_id UBERON:0001211 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 979,301 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01426_ENCODE_Enh_hg38.bed.gz processed_file_md5 66dd7f4dbceb0beda0ced2b33b2ca071 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01426_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01426_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01426_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01426_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01426_18_CALLS_segments.bed.gz raw_file_md5 d73ec9bc8d04eeff916e4f6d9f618ec7 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=Peyer's patch female adult (53 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01426;extended_md.donor.ids=ENCDO793LXB;extended_md.collated.donors=ENCDO793LXB;extended_md.accession=ENCSR005UXZ,ENCSR017RQC,ENCSR878KIY,ENCSR982PLJ,ENCSR322UXF,ENCSR837SGJ,ENCSR621BZD,ENCSR363CJF;extended_md.biosample.ids=ENCBS877BPO,ENCBS766ILR,ENCBS147ACJ;extended_md.assay=ChIP-seq,ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=UBERON:0001211;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name EpiMap_Enhancers Peyers patch ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]