Neuron NGADBXECOI5S3X • ATACdb v1.03 ATAC-seq Neuron TFBS Show metadata identifier NGADBXECOI5S3X data_source ATACdb_v1.03 Download track Download number_of_intervals 140,743 bp_covered 1,865,670 output_type transcription factor binding sites genome_build hg38 cell_type Neuron biosample_type Induced pluripotent stem cell line biosample_term_id CL:0000540 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 4,271,336 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0086_hg38_motif_binding_sites.bed.gz processed_file_md5 440a45504b012bf524959be1d6a16ebf wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0086_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0086_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0086;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=21971;Length=13233.533 kb;GEO_SRA=SRR5417050;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowled system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Neuron ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
WT-hiPSC 1 NGADBXEG6R4G24 • ATACdb v1.03 ATAC-seq WT-hiPSC 1 TFBS Show metadata identifier NGADBXEG6R4G24 data_source ATACdb_v1.03 Download track Download number_of_intervals 96,802 bp_covered 1,297,322 output_type transcription factor binding sites genome_build hg38 cell_type WT-hiPSC 1 biosample_type Induced pluripotent stem cell line biosample_term_id CL:0002248 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 3,290,337 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0134_hg38_motif_binding_sites.bed.gz processed_file_md5 2f920f68f2cb42bda1c5009903846796 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0134_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0134_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0134;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Neuron;Biosample_Name=WT hiPSC#1;Cancer_Type=Branchio-Oculo-Facial Syndrome (BOFS);Region_Number=34817;Length=13983.429 kb;GEO_SRA=SRR6418909;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes system_category Nervous life_stage Unknown track_name ATACdb_v1.03 WT-hiPSC 1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
T regulatory cell NGADBXEI3NU3ZZ • ATACdb v1.03 ATAC-seq T regulatory cell Accessible chromatin Show metadata identifier NGADBXEI3NU3ZZ data_source ATACdb_v1.03 Download track Download number_of_intervals 47,023 bp_covered 25,437,407 output_type accessible chromatin region genome_build hg38 cell_type T regulatory cell biosample_type Not applicable biosample_term_id CL:0000815 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,582,031 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0308_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 2b63d81f466c237c67b6f9bd50da2f41 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0308_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0308_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0308.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0308.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 789297c7b3c13eb154e61d78454c4b93 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0308;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Regulatory_T;Cancer_Type=Normal;Region_Number=47116;Length=25507.548 kb;GEO_SRA=SRR7650839;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 T regulatory cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Fibroblast NGADBXF345NXER • ATACdb v1.03 ATAC-seq Fibroblast TFBS Show metadata identifier NGADBXF345NXER data_source ATACdb_v1.03 Download track Download number_of_intervals 47,634 bp_covered 625,536 output_type transcription factor binding sites genome_build hg38 cell_type Fibroblast biosample_type Not applicable biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,446,832 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1472_hg38_motif_binding_sites.bed.gz processed_file_md5 0537fbf4ca7e3074ac8f5d4194ef4556 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1472_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1472_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1472;Biosample_Type=Other;Tissue_Type=Epithelial;Biosample_Name=6TFs;Cancer_Type=Other;Region_Number=8360;Length=4066.603 kb;GEO_SRA=SRR1982087;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FIL system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Peripheral mononucleated cell NGADBXF64WXH5U • ATACdb v1.03 ATAC-seq Peripheral mononucleated cell TFBS Show metadata identifier NGADBXF64WXH5U data_source ATACdb_v1.03 Download track Download number_of_intervals 157,077 bp_covered 2,114,350 output_type transcription factor binding sites genome_build hg38 cell_type Peripheral mononucleated cell biosample_type Cell line biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 4,981,424 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1437_hg38_motif_binding_sites.bed.gz processed_file_md5 ba621071dfc0e13e94277eabed6b18c8 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1437_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1437_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1437;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=24502;Length=18139.485 kb;GEO_SRA=SRR5785404;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwan system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Peripheral mononucleated cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
U2OS NGADBXFYQS7AOH • ATACdb v1.03 ATAC-seq U2OS Accessible chromatin Show metadata identifier NGADBXFYQS7AOH data_source ATACdb_v1.03 Download track Download number_of_intervals 12,237 bp_covered 8,025,513 output_type accessible chromatin region genome_build hg38 cell_type U2OS biosample_type Cell line biosample_term_id EFO:0002869 tissue_category Bone encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 372,367 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0433_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 651017a4ae7e062bb60122baf7294f77 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0433_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0433_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0433.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0433.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 f26d48f670f748223b555faf746e8406 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0433;Biosample_Type=Cell Line;Tissue_Type=Bone;Biosample_Name=U2OS;Cancer_Type=Osteosarcoma;Region_Number=12323;Length=8133.139 kb;GEO_SRA=SRR7537472;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system_category Skeletal life_stage Unknown track_name ATACdb_v1.03 U2OS ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Neuron NGADBXG6F3AEHF • ATACdb v1.03 ATAC-seq Neuron TFBS Show metadata identifier NGADBXG6F3AEHF data_source ATACdb_v1.03 Download track Download number_of_intervals 176,452 bp_covered 2,360,627 output_type transcription factor binding sites genome_build hg38 cell_type Neuron biosample_type Induced pluripotent stem cell line biosample_term_id CL:0000540 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 5,374,988 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0059_hg38_motif_binding_sites.bed.gz processed_file_md5 0c57e0405f6f530d4b4aa51a4826dac1 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0059_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0059_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0059;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=26768;Length=18503.465 kb;GEO_SRA=SRR5417023;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowled system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Neuron ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
T47D NGADBXGMAVWGBG • ATACdb v1.03 ATAC-seq T47D Accessible chromatin Show metadata identifier NGADBXGMAVWGBG data_source ATACdb_v1.03 Download track Download number_of_intervals 4,608 bp_covered 1,752,755 output_type accessible chromatin region genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 143,721 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0408_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 c035ff86be8fc8ea7fcaeb055a151bd3 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0408_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0408_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0408.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0408.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 7b0b260a4e0063cdf89cc8c02f66f604 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0408;Biosample_Type=Cell Line;Tissue_Type=Mammary Gland;Biosample_Name=T47D;Cancer_Type=Breast cancer;Region_Number=4636;Length=1744.16 kb;GEO_SRA=SRR6300361;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwangla system_category Reproductive life_stage Unknown track_name ATACdb_v1.03 T47D ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
CD8+ naive T cell NGADBXH3XARMNA • ATACdb v1.03 ATAC-seq CD8+ naive T cell TFBS Show metadata identifier NGADBXH3XARMNA data_source ATACdb_v1.03 Download track Download number_of_intervals 176,837 bp_covered 2,382,182 output_type transcription factor binding sites genome_build hg38 cell_type CD8+ naive T cell biosample_type Primary cell biosample_term_id CL:0000900 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 5,650,719 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0212_hg38_motif_binding_sites.bed.gz processed_file_md5 bc18c9c65f4c148f5b12d717cb47dd6b wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0212_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0212_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0212;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Naive_CD8_T;Cancer_Type=Normal;Region_Number=35081;Length=21077.016 kb;GEO_SRA=SRR7650742;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD8+ naive T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Induced pluripotent stem cell NGADBXHJKBOQTP • ATACdb v1.03 ATAC-seq Induced pluripotent stem cell TFBS Show metadata identifier NGADBXHJKBOQTP data_source ATACdb_v1.03 Download track Download number_of_intervals 5,064 bp_covered 68,619 output_type transcription factor binding sites genome_build hg38 cell_type Induced pluripotent stem cell biosample_type Stem cell biosample_term_id EFO:0004905 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 166,258 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0766_hg38_motif_binding_sites.bed.gz processed_file_md5 eeb1fc2a6fefa7f35160f64838f24cc5 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0766_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0766_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0766;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA18499;Cancer_Type=Other;Region_Number=2028;Length=667.53 kb;GEO_SRA=SRR6412482;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system_category Stem Cell life_stage Unknown track_name ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Induced pluripotent stem cell NGADBXHXBRRVJ5 • ATACdb v1.03 ATAC-seq Induced pluripotent stem cell TFBS Show metadata identifier NGADBXHXBRRVJ5 data_source ATACdb_v1.03 Download track Download number_of_intervals 191,783 bp_covered 2,588,064 output_type transcription factor binding sites genome_build hg38 cell_type Induced pluripotent stem cell biosample_type Stem cell biosample_term_id EFO:0004905 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 6,462,231 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0810_hg38_motif_binding_sites.bed.gz processed_file_md5 f8bf5ef25be2781985827d27d200d8d7 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0810_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0810_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0810;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA18522;Cancer_Type=Other;Region_Number=52014;Length=29724.397 kb;GEO_SRA=SRR6412453;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system_category Stem Cell life_stage Unknown track_name ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Neuron NGADBXI3A4SET7 • ATACdb v1.03 ATAC-seq Neuron TFBS Show metadata identifier NGADBXI3A4SET7 data_source ATACdb_v1.03 Download track Download number_of_intervals 57,757 bp_covered 757,338 output_type transcription factor binding sites genome_build hg38 cell_type Neuron biosample_type Induced pluripotent stem cell line biosample_term_id CL:0000540 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,691,667 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0071_hg38_motif_binding_sites.bed.gz processed_file_md5 1f5149c8ad99d479435175a7604e4d32 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0071_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0071_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0071;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=8463;Length=4141.564 kb;GEO_SRA=SRR5417035;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledge system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Neuron ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
hESC NGADBXISMZG5NH • ATACdb v1.03 ATAC-seq hESC TFBS Show metadata identifier NGADBXISMZG5NH data_source ATACdb_v1.03 Download track Download number_of_intervals 42,078 bp_covered 556,479 output_type transcription factor binding sites genome_build hg38 cell_type hESC biosample_type Stem cell biosample_term_id CL:0002322 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,254,166 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0612_hg38_motif_binding_sites.bed.gz processed_file_md5 b1956646e91135e5ab55c13d7260c112 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0612_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0612_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0612;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=Embryo;Cancer_Type=Normal;Region_Number=8409;Length=3272.313 kb;GEO_SRA=SRR6501972;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system_category Stem Cell life_stage Embryonic track_name ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
HFF NGADBXJE3MRNPJ • ATACdb v1.03 ATAC-seq HFF Accessible chromatin Show metadata identifier NGADBXJE3MRNPJ data_source ATACdb_v1.03 Download track Download number_of_intervals 97,864 bp_covered 52,537,893 output_type accessible chromatin region genome_build hg38 cell_type HFF biosample_type Cell line biosample_term_id CL:1001608 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 3,186,901 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0691_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 dc4913cf379e46d1d4cb546719b57639 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0691_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0691_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0691.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0691.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 ee97b2051ad21622002324137cdba271 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0691;Biosample_Type=Cell Line;Tissue_Type=Foreskin;Biosample_Name=HFF;Cancer_Type=Normal;Region_Number=97944;Length=52593.913 kb;GEO_SRA=GSM2688944;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 HFF ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Fibroblast NGADBXJMLP36IK • ATACdb v1.03 ATAC-seq Fibroblast TFBS Show metadata identifier NGADBXJMLP36IK data_source ATACdb_v1.03 Download track Download number_of_intervals 53,695 bp_covered 704,474 output_type transcription factor binding sites genome_build hg38 cell_type Fibroblast biosample_type Not applicable biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 1,612,112 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1475_hg38_motif_binding_sites.bed.gz processed_file_md5 5608e5c5444df2a45a70b81ed777439d wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1475_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1475_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1475;Biosample_Type=Other;Tissue_Type=Epithelial;Biosample_Name=CEC;Cancer_Type=Other;Region_Number=9245;Length=4231.029 kb;GEO_SRA=SRR1982090;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
BJ NGADBXJXRGQYYR • ATACdb v1.03 ATAC-seq BJ TFBS Show metadata identifier NGADBXJXRGQYYR data_source ATACdb_v1.03 Download track Download number_of_intervals 154,423 bp_covered 2,089,983 output_type transcription factor binding sites genome_build hg38 cell_type BJ biosample_type Cell line biosample_term_id EFO:0002779 tissue_category Connective Tissue encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 5,606,867 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0716_hg38_motif_binding_sites.bed.gz processed_file_md5 c9415c023a2a37f865bcbb5b42b0afa2 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0716_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0716_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0716;Biosample_Type=Cell Line;Tissue_Type=Skin;Biosample_Name=BJ;Cancer_Type=Other;Region_Number=83966;Length=31778.048 kb;GEO_SRA=GSM2430669;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system_category Skeletal life_stage Unknown track_name ATACdb_v1.03 BJ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Induced pluripotent stem cell NGADBXKRZODNVX • ATACdb v1.03 ATAC-seq Induced pluripotent stem cell TFBS Show metadata identifier NGADBXKRZODNVX data_source ATACdb_v1.03 Download track Download number_of_intervals 211,581 bp_covered 2,879,425 output_type transcription factor binding sites genome_build hg38 cell_type Induced pluripotent stem cell biosample_type Stem cell biosample_term_id EFO:0004905 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 7,353,370 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0799_hg38_motif_binding_sites.bed.gz processed_file_md5 bdb81026c5cda525bab70fed6f11e345 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0799_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0799_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0799;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA19114;Cancer_Type=Other;Region_Number=65545;Length=36403.022 kb;GEO_SRA=SRR6412434;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system_category Stem Cell life_stage Unknown track_name ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
BIN-67 NGADBXL3EFHICN • ATACdb v1.03 ATAC-seq BIN-67 Accessible chromatin Show metadata identifier NGADBXL3EFHICN data_source ATACdb_v1.03 Download track Download number_of_intervals 22,393 bp_covered 8,388,060 output_type accessible chromatin region genome_build hg38 cell_type BIN-67 biosample_type Cell line biosample_term_id Not available tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 721,150 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1351_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 c052c3c28e61846ec4611e07e6aacd9a wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1351_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1351_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1351.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1351.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 8ff663c46fcc717f92d4f94a333271d7 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1351;Biosample_Type=Cell Line;Tissue_Type=Ovarian;Biosample_Name=BIN-67;Cancer_Type=Deficient thoracic sarcomas;Region_Number=22466;Length=8435.459 kb;GEO_SRA=SRR7536821;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf system_category Reproductive life_stage Unknown track_name ATACdb_v1.03 BIN-67 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Peripheral mononucleated cell NGADBXL3VTXBHP • ATACdb v1.03 ATAC-seq Peripheral mononucleated cell Accessible chromatin Show metadata identifier NGADBXL3VTXBHP data_source ATACdb_v1.03 Download track Download number_of_intervals 20,684 bp_covered 12,712,390 output_type accessible chromatin region genome_build hg38 cell_type Peripheral mononucleated cell biosample_type Cell line biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 705,142 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1418_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 7a4a76222c119cf2507bab64b63b983f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1418_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1418_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1418.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1418.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 9d95c951cc3f38d2485a6fdb510c9229 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1418;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=20729;Length=12746.488 kb;GEO_SRA=SRR5785369;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwan system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Peripheral mononucleated cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
PC-9 NGADBXL6DRREIF • ATACdb v1.03 ATAC-seq PC-9 Accessible chromatin Show metadata identifier NGADBXL6DRREIF data_source ATACdb_v1.03 Download track Download number_of_intervals 65,778 bp_covered 18,312,304 output_type accessible chromatin region genome_build hg38 cell_type PC-9 biosample_type Cell line biosample_term_id EFO:0002847 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 2,051,402 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0979_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 ee1158c78bac5751f1721b883cfc0360 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0979_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0979_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0979.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0979.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 55d62493ee9314c9355b8faaed3f7bc8 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0979;Biosample_Type=Cell Line;Tissue_Type=Lung;Biosample_Name=PC-9;Cancer_Type=Lung cancer;Region_Number=65849;Length=18350.287 kb;GEO_SRA=SRR5800659;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system_category Respiratory life_stage Unknown track_name ATACdb_v1.03 PC-9 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]