consolidated • Omental fat pad NGEPMPPF7BPALZ • EpiMap33536621 ChromHMM Omental fat pad Chromatin states Show metadata Download track Track metadata identifier NGEPMPPF7BPALZ data_source EpiMap Download track Download number_of_intervals 282,485 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Omental fat pad biosample_type Tissue biosample_term_id UBERON:0010414 tissue_category Adipose encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 2,755,996 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01394_ENCODE_All_hg38.bed.gz processed_file_md5 13a6a42cc7dbdd5640e99633614cae5e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01394_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01394_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01394_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01394_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01394_18_CALLS_segments.bed.gz raw_file_md5 c4a881387c4c4d0b2cba21a00c51dcca data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=omental fat pad female adult (53 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01394;extended_md.donor.ids=ENCDO793LXB;extended_md.collated.donors=ENCDO793LXB;extended_md.accession=ENCSR154OUQ;extended_md.biosample.ids=ENCBS299IZQ;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0010414;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name EpiMap Omental fat pad ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Renal cortex interstitium NGEPMPPP7KALRU • EpiMap33536621 ChromHMM Renal cortex interstitium Chromatin states Show metadata Download track Track metadata identifier NGEPMPPP7KALRU data_source EpiMap Download track Download number_of_intervals 374,806 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Renal cortex interstitium biosample_type Tissue biosample_term_id UBERON:0005270 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,674,567 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01486_Roadmap_2021_All_hg38.bed.gz processed_file_md5 4304d59c15781d7a3f9877a1c698888b wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01486_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01486_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01486_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01486_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01486_18_CALLS_segments.bed.gz raw_file_md5 e7db30161386b2e67791e1da099072d3 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=renal cortex interstitium male embryo (108 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01486;extended_md.donor.ids=ENCDO132ASK,ENCDO014CNM;extended_md.collated.donors=ENCDO132ASK,ENCDO014CNM;extended_md.accession=ENCSR129KIV,ENCSR828RNY;extended_md.biosample.ids=ENCBS789YVL,ENCBS455AXR;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=108;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap Renal cortex interstitium ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Liver NGEPMPPXAQQKSR • EpiMap Enhancers33536621 ChromHMM Liver Enhancer Show metadata Download track Track metadata identifier NGEPMPPXAQQKSR data_source EpiMap_Enhancers Download track Download number_of_intervals 78,571 bp_covered 58,909,600 output_type enhancer chromatin states genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 746,561 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01164_ENCODE_Enh_hg38.bed.gz processed_file_md5 703d408ee575a52a5596dde3234a05af wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01164_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01164_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01164_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01164_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01164_18_CALLS_segments.bed.gz raw_file_md5 5c061920b025287b7695298b4dcfb660 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=liver female embryo (101 day) and female embryo (113 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01164;extended_md.donor.ids=ENCDO987XTQ,ENCDO060OTP;extended_md.collated.donors=ENCDO987XTQ,ENCDO060OTP;extended_md.accession=ENCSR562FNN;extended_md.biosample.ids=ENCBS275VNY,ENCBS037HTE;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=101113;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap_Enhancers Liver ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • OCI-LY1 NGEPMPPYFILECU • EpiMap Enhancers33536621 ChromHMM OCI-LY1 Enhancer Show metadata Download track Track metadata identifier NGEPMPPYFILECU data_source EpiMap_Enhancers Download track Download number_of_intervals 125,958 bp_covered 101,452,800 output_type enhancer chromatin states genome_build hg38 cell_type OCI-LY1 biosample_type Cell line biosample_term_id EFO:0005907 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,164,733 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01389_ENCODE_Enh_hg38.bed.gz processed_file_md5 7149b6c80de0ed301f0b093dc55be104 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01389_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01389_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01389_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01389_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01389_18_CALLS_segments.bed.gz raw_file_md5 9df81dc1557cb5aa10278ad6d55f2fa7 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=OCI-LY1;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01389;extended_md.donor.ids=ENCDO350AAA;extended_md.collated.donors=ENCDO350AAA;extended_md.accession=ENCSR449AYM,ENCSR597UDW,ENCSR678AFU,ENCSR960ZMM,ENCSR189AGR,ENCSR076JBA,ENCSR859JNA,ENCSR768JED,ENCSR790EDQ,ENCSR874HSH,ENCSR184QUS,ENCSR155XXB,ENCSR422JNY;extended_md.biosample.ids=ENCBS945KYE,ENCBS945KYE,ENCBS397COL,ENCBS729LWO,ENCBS729LWO,ENCBS899DSB,ENCBS899DSB,ENCBS397COL,ENCBS899DSB;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=44;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0005907;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name EpiMap_Enhancers OCI-LY1 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Cingulate gyrus NGEPMPQP3LJYWT • EpiMap Enhancers33536621 ChromHMM Cingulate gyrus Enhancer Show metadata Download track Track metadata identifier NGEPMPQP3LJYWT data_source EpiMap_Enhancers Download track Download number_of_intervals 200,806 bp_covered 143,547,200 output_type enhancer chromatin states genome_build hg38 cell_type Cingulate gyrus biosample_type Tissue biosample_term_id UBERON:0002967 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,837,415 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00220_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 5a7c5899035419a5461917cd92dc34ab wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00220_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00220_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00220_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00220_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00220_18_CALLS_segments.bed.gz raw_file_md5 ebe7a88b5af6d750da5c8c748e7fd2bb data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=cingulate gyrus male adult (81 year);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00220;extended_md.donor.ids=ENCDO980BZD;extended_md.collated.donors=ENCDO980BZD;extended_md.accession=ENCSR736SFP,ENCSR070GTK,ENCSR022LOH,ENCSR032BMQ,ENCSR443NEP,ENCSR355UYP;extended_md.biosample.ids=ENCBS008HYR,ENCBS678HGK;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=81;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap_Enhancers Cingulate gyrus ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • GM19238 NGEPMPQWHCRFE5 • EpiMap33536621 ChromHMM GM19238 Chromatin states Show metadata Download track Track metadata identifier NGEPMPQWHCRFE5 data_source EpiMap Download track Download number_of_intervals 594,832 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type GM19238 biosample_type Cell line biosample_term_id EFO:0002788 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,785,190 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00471_ENCODE_All_hg38.bed.gz processed_file_md5 9ba8dfc076066b625f60e905b887191e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00471_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00471_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00471_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00471_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00471_18_CALLS_segments.bed.gz raw_file_md5 49eb075a05294b869352329f002716ae data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=GM19238;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00471;extended_md.donor.ids=ENCDO000ACL;extended_md.collated.donors=ENCDO000ACL;extended_md.accession=ENCSR000EJJ;extended_md.biosample.ids=ENCBS509ENC;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0002788;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap GM19238 ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Tibial nerve NGEPMPR2P5T6GX • EpiMap Enhancers33536621 ChromHMM Tibial nerve Enhancer Show metadata Download track Track metadata identifier NGEPMPR2P5T6GX data_source EpiMap_Enhancers Download track Download number_of_intervals 70,915 bp_covered 75,192,800 output_type enhancer chromatin states genome_build hg38 cell_type Tibial nerve biosample_type Tissue biosample_term_id UBERON:0001323 tissue_category Nervous encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 668,818 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01840_ENCODE_Enh_hg38.bed.gz processed_file_md5 6f7814b674716d98f0c81fa01c9ba321 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01840_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01840_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01840_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01840_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01840_18_CALLS_segments.bed.gz raw_file_md5 7770e4b548b9af780b2586bcf8eac0fd data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=tibial nerve female adult (51 year);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01840;extended_md.donor.ids=ENCDO271OUW;extended_md.collated.donors=ENCDO271OUW;extended_md.accession=ENCSR401ESD,ENCSR831KAH;extended_md.biosample.ids=ENCBS036BKD,ENCBS689AWK;extended_md.assay=ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=51;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap_Enhancers Tibial nerve ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • GM12875 NGEPMPR6RKDG3H • EpiMap33536621 ChromHMM GM12875 Chromatin states Show metadata Download track Track metadata identifier NGEPMPR6RKDG3H data_source EpiMap Download track Download number_of_intervals 388,023 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type GM12875 biosample_type Cell line biosample_term_id EFO:0001162 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,779,152 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00438_ENCODE_All_hg38.bed.gz processed_file_md5 7911d96dbef26b8b2fa1b43662c3170d wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00438_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00438_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00438_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00438_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00438_18_CALLS_segments.bed.gz raw_file_md5 0c5c08f307d25ef4ba4ebde46c06b77f data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=GM12875;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00438;extended_md.donor.ids=ENCDO000ABZ;extended_md.collated.donors=ENCDO000ABZ;extended_md.accession=ENCSR000DRS;extended_md.biosample.ids=ENCBS823YEP;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0001162;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap GM12875 ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Bone NGEPMPRQOE5VJZ • EpiMap Enhancers33536621 ChromHMM Bone Enhancer Show metadata Download track Track metadata identifier NGEPMPRQOE5VJZ data_source EpiMap_Enhancers Download track Download number_of_intervals 79,229 bp_covered 64,436,600 output_type enhancer chromatin states genome_build hg38 cell_type Bone biosample_type Tissue biosample_term_id NCIT:C12366 tissue_category Bone encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 748,756 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00084_ENCODE_Enh_hg38.bed.gz processed_file_md5 d91f1e46e0f3a2c0ebe71777c9374938 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00084_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00084_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00084_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00084_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00084_18_CALLS_segments.bed.gz raw_file_md5 5d0a49c4f9480336085e969e254f4c43 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=arm bone male embryo (81 day);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00084;extended_md.donor.ids=ENCDO184UZW;extended_md.collated.donors=ENCDO184UZW;extended_md.accession=ENCSR274SDO,ENCSR976XOY;extended_md.biosample.ids=ENCBS582SLC,ENCBS104ACH;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=81;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Skeletal life_stage Embryonic track_name EpiMap_Enhancers Bone ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Chorionic villus NGEPMPRVCOAMPP • EpiMap Enhancers33536621 ChromHMM Chorionic villus Enhancer Show metadata Download track Track metadata identifier NGEPMPRVCOAMPP data_source EpiMap_Enhancers Download track Download number_of_intervals 87,748 bp_covered 98,147,200 output_type enhancer chromatin states genome_build hg38 cell_type Chorionic villus biosample_type Tissue biosample_term_id UBERON:0007106 tissue_category Placenta encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 827,989 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00217_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 c7eedf311826dce4a14686a3daff066f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00217_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00217_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00217_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00217_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00217_18_CALLS_segments.bed.gz raw_file_md5 d30dc2880c1178967631fedd2a377ba2 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=chorionic villus male embryo (38 weeks);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00217;extended_md.donor.ids=ENCDO974LFM;extended_md.collated.donors=ENCDO974LFM;extended_md.accession=ENCSR957TGI,ENCSR619POC,ENCSR646YBA,ENCSR746ZXP,ENCSR473ZFG,ENCSR320MYR;extended_md.biosample.ids=ENCBS007MVB;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=38;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=UBERON:0007106;is_hg38_lifted=no system_category Placental life_stage Embryonic track_name EpiMap_Enhancers Chorionic villus ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • ES-I3 NGEPMPSBR7QR3O • EpiMap Enhancers33536621 ChromHMM ES-I3 Enhancer Show metadata Download track Track metadata identifier NGEPMPSBR7QR3O data_source EpiMap_Enhancers Download track Download number_of_intervals 184,750 bp_covered 131,616,800 output_type enhancer chromatin states genome_build hg38 cell_type ES-I3 biosample_type Stem cell biosample_term_id EFO:0007076 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,704,529 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00315_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 8a97e5ac1c404be1171ec55cf13e0aee wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00315_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00315_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00315_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00315_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00315_18_CALLS_segments.bed.gz raw_file_md5 e5eb6fe280723255c142d1d876439d0f data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=ES-I3;tissue_of_origin=Embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00315;extended_md.donor.ids=ENCDO840PTG;extended_md.collated.donors=ENCDO840PTG;extended_md.accession=ENCSR730FLZ,ENCSR844DRI,ENCSR097ORD,ENCSR895IWH;extended_md.biosample.ids=ENCBS593HOC,ENCBS401QZO,ENCBS268NCC,ENCBS421TWG,ENCBS312JDV,ENCBS057COO,ENCBS599JGY,ENCBS412HHB;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0007076;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap_Enhancers ES-I3 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Common myeloid progenitor cell NGEPMPSDLBZUNL • EpiMap33536621 ChromHMM Common myeloid progenitor cell Chromatin states Show metadata Download track Track metadata identifier NGEPMPSDLBZUNL data_source EpiMap Download track Download number_of_intervals 543,109 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Common myeloid progenitor cell biosample_type Primary cell biosample_term_id NCIT:C12552 tissue_category Umbilical Cord encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,301,811 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00240_Roadmap_2021_All_hg38.bed.gz processed_file_md5 9d06f505dc2da0434458fbbee68d3a88 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00240_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00240_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00240_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00240_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00240_18_CALLS_segments.bed.gz raw_file_md5 15adc3ca70f212f9cabc591974ee0637 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=common myeloid progenitorCD34+ male adult (43 years);tissue_of_origin=Cord blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00240;extended_md.donor.ids=ENCDO147FTI;extended_md.collated.donors=ENCDO147FTI;extended_md.accession=ENCSR735BIM;extended_md.biosample.ids=ENCBS771DBI;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=43;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Adult track_name EpiMap Common myeloid progenitor cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Brain NGEPMPSTBYRP3Q • EpiMap Enhancers33536621 ChromHMM Brain Enhancer Show metadata Download track Track metadata identifier NGEPMPSTBYRP3Q data_source EpiMap_Enhancers Download track Download number_of_intervals 95,044 bp_covered 65,104,600 output_type enhancer chromatin states genome_build hg38 cell_type Brain biosample_type Tissue biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 911,145 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00135_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 9749e6f3566910a42860ecda2f499c5c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00135_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00135_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00135_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00135_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00135_18_CALLS_segments.bed.gz raw_file_md5 e7e780c3c0116d99871c5741a2992944 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=brain female embryo (85 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00135;extended_md.donor.ids=ENCDO316SVQ;extended_md.collated.donors=ENCDO316SVQ;extended_md.accession=ENCSR026EOM;extended_md.biosample.ids=ENCBS471MPZ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=85;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Embryonic track_name EpiMap_Enhancers Brain ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Hematopoietic multipotent progenitor cell NGEPMPSXDMP25Q • EpiMap33536621 ChromHMM Hematopoietic multipotent progenitor cell Chromatin states Show metadata Download track Track metadata identifier NGEPMPSXDMP25Q data_source EpiMap Download track Download number_of_intervals 527,406 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Hematopoietic multipotent progenitor cell biosample_type In vitro differentiated cells biosample_term_id CL:0000837 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,152,736 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00550_ENCODE_All_hg38.bed.gz processed_file_md5 76d0caeffa5246200a843e56b4c3227b wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00550_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00550_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00550_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00550_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00550_18_CALLS_segments.bed.gz raw_file_md5 2aa637a2110b4f1c7d445315cb20ee03 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=hematopoietic multipotent progenitor cell treated with interleukin-3 for 4 dayskit ligand for 4 dayshydrocortisone succinate for 4 dayserythropoietin for 4 days;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00550;extended_md.donor.ids=ENCDO937OUY;extended_md.collated.donors=ENCDO937OUY;extended_md.accession=ENCSR148VUP;extended_md.biosample.ids=ENCBS721DUI,ENCBS924ALK;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=25;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap Hematopoietic multipotent progenitor cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • CD4+ alpha-beta T cell NGEPMPTBLJEXLO • EpiMap33536621 ChromHMM CD4+ alpha-beta T cell Chromatin states Show metadata Download track Track metadata identifier NGEPMPTBLJEXLO data_source EpiMap Download track Download number_of_intervals 466,058 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type CD4+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000624 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,543,354 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00188_Roadmap_2021_All_hg38.bed.gz processed_file_md5 0097c899463c7558035c57b1ef2acede wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00188_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00188_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00188_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00188_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00188_18_CALLS_segments.bed.gz raw_file_md5 be1c964b3ef589432c08ca3872625a5e data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=CD4+alpha-beta T cell female adult (33 years);tissue_of_origin=Blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00188;extended_md.donor.ids=ENCDO412QUR;extended_md.collated.donors=ENCDO412QUR;extended_md.accession=ENCSR643GHI;extended_md.biosample.ids=ENCBS117TZS;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=33;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap CD4+ alpha-beta T cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Muscle NGEPMPTOR6K3T3 • EpiMap33536621 ChromHMM Muscle Chromatin states Show metadata Download track Track metadata identifier NGEPMPTOR6K3T3 data_source EpiMap Download track Download number_of_intervals 392,390 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,840,738 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01329_Roadmap_2015_All_hg38.bed.gz processed_file_md5 ff50acd653789d077db30ea74298fe78 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01329_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01329_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01329_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01329_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01329_18_CALLS_segments.bed.gz raw_file_md5 c6157ad5473ead4ed8481d04e7fe90c6 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=muscle of leg male embryo (96 days);tissue_of_origin=Leg;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01329;extended_md.donor.ids=ENCDO817EKT,ENCDO220PYT;extended_md.collated.donors=ENCDO817EKT,ENCDO220PYT;extended_md.accession=ENCSR297ORG,ENCSR059LXL;extended_md.biosample.ids=ENCBS099OIO,ENCBS517FUR;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=96;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap Muscle ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • H7-hESC NGEPMPTQ3YI76R • EpiMap33536621 ChromHMM H7-hESC Chromatin states Show metadata Download track Track metadata identifier NGEPMPTQ3YI76R data_source EpiMap Download track Download number_of_intervals 518,051 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type H7-hESC biosample_type Stem cell biosample_term_id EFO:0005904 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,025,865 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00483_Roadmap_2015_All_hg38.bed.gz processed_file_md5 8385d576442670a150e17ca3d706ab53 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00483_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00483_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00483_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00483_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00483_18_CALLS_segments.bed.gz raw_file_md5 bd91c485252380756db97090b0516170 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=H7-hESC;tissue_of_origin=Embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00483;extended_md.donor.ids=ENCDO221AAA;extended_md.collated.donors=ENCDO221AAA;extended_md.accession=ENCSR000EJO,ENCSR000EMZ,ENCSR958WOY,ENCSR726ZFP,ENCSR438FON,ENCSR930SYJ,ENCSR000DSR,ENCSR198HVO,ENCSR000DSS,ENCSR000DST;extended_md.biosample.ids=ENCBS293AAA,ENCBS465FZV,ENCBS291AAA,ENCBS017AOD,ENCBS962QAF,ENCBS851RDN,ENCBS920PVU,ENCBS884CKU,ENCBS297CQV,ENCBS311AAZ,ENCBS721YNV,ENCBS851RDN;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0005904;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap H7-hESC ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Prostate gland NGEPMPUSKTMX2O • EpiMap33536621 ChromHMM Prostate gland Chromatin states Show metadata Download track Track metadata identifier NGEPMPUSKTMX2O data_source EpiMap Download track Download number_of_intervals 330,638 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Prostate gland biosample_type Tissue biosample_term_id UBERON:0002367 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,208,288 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01459_ENCODE_All_hg38.bed.gz processed_file_md5 bd07621dd26a3991d71af44e619d4c76 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01459_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01459_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01459_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01459_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01459_18_CALLS_segments.bed.gz raw_file_md5 15dfb6eb82eabf6baae0d218836cd2db data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=prostate gland male adult (54 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01459;extended_md.donor.ids=ENCDO451RUA;extended_md.collated.donors=ENCDO451RUA;extended_md.accession=ENCSR499FXI,ENCSR133QBG,ENCSR763IDK,ENCSR748RBT;extended_md.biosample.ids=ENCBS619YXY,ENCBS633UTQ,ENCBS633UTQ;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=54;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0002367;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap Prostate gland ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Muscle NGEPMPVU4J6E4E • EpiMap Enhancers33536621 ChromHMM Muscle Enhancer Show metadata Download track Track metadata identifier NGEPMPVU4J6E4E data_source EpiMap_Enhancers Download track Download number_of_intervals 89,568 bp_covered 59,667,000 output_type enhancer chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 847,987 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01309_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 bda0a11677f08ca8678151d68e65cb64 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01309_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01309_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01309_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01309_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01309_18_CALLS_segments.bed.gz raw_file_md5 547a7926485e799d4a70ab1a8fcc49ff data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=muscle of back female embryo (98 days);tissue_of_origin=Back;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01309;extended_md.donor.ids=ENCDO837QWL;extended_md.collated.donors=ENCDO837QWL;extended_md.accession=ENCSR072NBR;extended_md.biosample.ids=ENCBS174IGM;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=98;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap_Enhancers Muscle ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • CD8+ alpha-beta T cell NGEPMPWLRBNMTW • EpiMap33536621 ChromHMM CD8+ alpha-beta T cell Chromatin states Show metadata Download track Track metadata identifier NGEPMPWLRBNMTW data_source EpiMap Download track Download number_of_intervals 431,053 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type CD8+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000625 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,188,926 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00198_Roadmap_2015_All_hg38.bed.gz processed_file_md5 fe3d9526d747b96ded802ea9b20dd213 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00198_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00198_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00198_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00198_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00198_18_CALLS_segments.bed.gz raw_file_md5 8d0688212dd8fae556c54bdad9851b3e data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=CD8+alpha-beta T cell male adult (28 years);tissue_of_origin=Blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00198;extended_md.donor.ids=ENCDO273TST;extended_md.collated.donors=ENCDO273TST;extended_md.accession=ENCSR166ZZZ;extended_md.biosample.ids=ENCBS126IHB;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=28;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap CD8+ alpha-beta T cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]