consolidated • MCF 10A NGEPMWBAAGVZB2 • EpiMap33536621 ChromHMM MCF 10A Chromatin states Show metadata Download track Track metadata identifier NGEPMWBAAGVZB2 data_source EpiMap Download track Download number_of_intervals 484,604 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type MCF 10A biosample_type Cell line biosample_term_id EFO:0001200 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,711,920 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01224_ENCODE_All_hg38.bed.gz processed_file_md5 537a50694f4aa4a4c98a7dd01b387fa6 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01224_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01224_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01224_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01224_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01224_18_CALLS_segments.bed.gz raw_file_md5 d95f204520f3d5491a8a3d2e338fd098 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=MCF 10A treated with 1 ?M tamoxifen for 24 hours;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01224;extended_md.donor.ids=ENCDO000AAP;extended_md.collated.donors=ENCDO000AAP;extended_md.accession=ENCSR752EPH;extended_md.biosample.ids=ENCBS417KGL;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=36;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0001200;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap MCF 10A ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Pancreas NGEPMWEO23TPVH • EpiMap33536621 ChromHMM Pancreas Chromatin states Show metadata Download track Track metadata identifier NGEPMWEO23TPVH data_source EpiMap Download track Download number_of_intervals 365,523 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,515,411 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00281_Roadmap_2021_All_hg38.bed.gz processed_file_md5 7e6c360654eb873a100171691cfac23d wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00281_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00281_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00281_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00281_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00281_18_CALLS_segments.bed.gz raw_file_md5 238981b2a7d87e4062b940285af4e548 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=endocrine pancreas adult (59 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00281;extended_md.donor.ids=ENCDO267ZBN;extended_md.collated.donors=ENCDO267ZBN;extended_md.accession=ENCSR817QHX,ENCSR884EVT,ENCSR372OTD,ENCSR492PXH,ENCSR111RZN,ENCSR588WOD;extended_md.biosample.ids=ENCBS769QYN;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=59;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name EpiMap Pancreas ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Smooth muscle cell NGEPMWFATRC4HF • EpiMap33536621 ChromHMM Smooth muscle cell Chromatin states Show metadata Download track Track metadata identifier NGEPMWFATRC4HF data_source EpiMap Download track Download number_of_intervals 314,815 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Smooth muscle cell biosample_type In vitro differentiated cells biosample_term_id CL:0000192 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,046,954 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01612_ENCODE_All_hg38.bed.gz processed_file_md5 31fcbd4ada1176de1fca04ce4a21f7b2 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01612_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01612_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01612_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01612_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01612_18_CALLS_segments.bed.gz raw_file_md5 239ec7405a09a91b0f07e5331be9ef59 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=smooth muscle cell originated from H9;tissue_of_origin=Embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01612;extended_md.donor.ids=ENCDO222AAA;extended_md.collated.donors=ENCDO222AAA;extended_md.accession=ENCSR783AXV,ENCSR143RMH,ENCSR540UZV,ENCSR672HBY,ENCSR651JDA,ENCSR189XIE,ENCSR090QTV,ENCSR210ZPC,ENCSR493FIV,ENCSR301VIW,ENCSR515PKY,ENCSR130IMV;extended_md.biosample.ids=ENCBS780PCJ,ENCBS899TTJ,ENCBS780PCJ,ENCBS899TTJ;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=5;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap Smooth muscle cell ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Large intestine NGEPMWFDPXHY5L • EpiMap33536621 ChromHMM Large intestine Chromatin states Show metadata Download track Track metadata identifier NGEPMWFDPXHY5L data_source EpiMap Download track Download number_of_intervals 397,535 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Large intestine biosample_type Tissue biosample_term_id UBERON:0000059 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,883,166 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01120_Roadmap_2021_All_hg38.bed.gz processed_file_md5 b3b462ca3f0c5fb8d7d72cb53d924fc9 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01120_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01120_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01120_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01120_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01120_18_CALLS_segments.bed.gz raw_file_md5 0d0d84be6a27340d5b646fa7e655df19 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=large intestine male embryo (113 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01120;extended_md.donor.ids=ENCDO608XKS;extended_md.collated.donors=ENCDO608XKS;extended_md.accession=ENCSR047FNH;extended_md.biosample.ids=ENCBS028WMZ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=113;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap Large intestine ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • T-cell NGEPMWFIOQZMWK • EpiMap33536621 ChromHMM T-cell Chromatin states Show metadata Download track Track metadata identifier NGEPMWFIOQZMWK data_source EpiMap Download track Download number_of_intervals 459,449 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type T-cell biosample_type Primary cell biosample_term_id CL:0000084 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,482,569 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01688_Roadmap_2021_All_hg38.bed.gz processed_file_md5 c99f1f1192f47dcddabcd3991206b6d5 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01688_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01688_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01688_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01688_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01688_18_CALLS_segments.bed.gz raw_file_md5 7453884eaab1c718c5431ff797fa795e data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=T-cell male adult (36 years);tissue_of_origin=Cord blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01688;extended_md.donor.ids=ENCDO441UHQ;extended_md.collated.donors=ENCDO441UHQ;extended_md.accession=ENCSR627UDJ;extended_md.biosample.ids=ENCBS872QGD;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=36;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap T-cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Testis NGEPMWHLKLZUB3 • EpiMap Enhancers33536621 ChromHMM Testis Enhancer Show metadata Download track Track metadata identifier NGEPMWHLKLZUB3 data_source EpiMap_Enhancers Download track Download number_of_intervals 52,080 bp_covered 57,796,600 output_type enhancer chromatin states genome_build hg38 cell_type Testis biosample_type Tissue biosample_term_id UBERON:0000473 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 504,364 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01715_ENCODE_Enh_hg38.bed.gz processed_file_md5 762c60d57835a1da3ba46d18472093d9 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01715_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01715_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01715_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01715_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01715_18_CALLS_segments.bed.gz raw_file_md5 6b0ddbb38a663197e2ab889940ceb78a data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=testis male adult (37 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01715;extended_md.donor.ids=ENCDO845WKR;extended_md.collated.donors=ENCDO845WKR;extended_md.accession=ENCSR376JOC,ENCSR210NKB,ENCSR611DJQ,ENCSR561MYM;extended_md.biosample.ids=ENCBS631HJF,ENCBS133MOQ;extended_md.assay=ChIP-seq,ATAC-seq;extended_md.life.stage=adult;extended_md.age=37;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap_Enhancers Testis ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • UCSF-4 NGEPMWHOYOZBPX • EpiMap33536621 ChromHMM UCSF-4 Chromatin states Show metadata Download track Track metadata identifier NGEPMWHOYOZBPX data_source EpiMap Download track Download number_of_intervals 542,895 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type UCSF-4 biosample_type Stem cell biosample_term_id EFO:0007116 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,215,937 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01866_Roadmap_2015_All_hg38.bed.gz processed_file_md5 396a79ee0fd73794ad4e043f3428f66f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01866_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01866_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01866_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01866_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01866_18_CALLS_segments.bed.gz raw_file_md5 1baa57674fc497fa233eeeaa8cc5b3a6 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=UCSF-4;tissue_of_origin=Embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01866;extended_md.donor.ids=ENCDO499GAU;extended_md.collated.donors=ENCDO499GAU;extended_md.accession=ENCSR734QPK,ENCSR615YKN,ENCSR595KPI,ENCSR550GSE,ENCSR656PGJ,ENCSR485ZKB;extended_md.biosample.ids=ENCBS838AWQ,ENCBS488VWE,ENCBS488VWE,ENCBS497PCQ,ENCBS838AWQ;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0007116;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap UCSF-4 ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Renal cortex interstitium NGEPMWIK3KYSWC • EpiMap Enhancers33536621 ChromHMM Renal cortex interstitium Enhancer Show metadata Download track Track metadata identifier NGEPMWIK3KYSWC data_source EpiMap_Enhancers Download track Download number_of_intervals 78,158 bp_covered 53,758,600 output_type enhancer chromatin states genome_build hg38 cell_type Renal cortex interstitium biosample_type Tissue biosample_term_id UBERON:0005270 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 750,429 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01489_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 7a9cb77158fb572b90cc3f2d185d53d1 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01489_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01489_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01489_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01489_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01489_18_CALLS_segments.bed.gz raw_file_md5 c807bec18dc5f91058df86b8c47588ae data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=renal cortex interstitium male embryo (91 day);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01489;extended_md.donor.ids=ENCDO375VTO;extended_md.collated.donors=ENCDO375VTO;extended_md.accession=ENCSR254AGA;extended_md.biosample.ids=ENCBS620YJZ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=91;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Renal cortex interstitium ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Large intestine NGEPMWIOAZV23H • EpiMap Enhancers33536621 ChromHMM Large intestine Enhancer Show metadata Download track Track metadata identifier NGEPMWIOAZV23H data_source EpiMap_Enhancers Download track Download number_of_intervals 100,023 bp_covered 67,490,600 output_type enhancer chromatin states genome_build hg38 cell_type Large intestine biosample_type Tissue biosample_term_id UBERON:0000059 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 941,011 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01116_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 207d3aa945a2db5e29d6a1e60c03ba5e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01116_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01116_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01116_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01116_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01116_18_CALLS_segments.bed.gz raw_file_md5 a2ccef2aed8d9fabbc4b76dd3b396036 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=large intestine female embryo (91 day);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01116;extended_md.donor.ids=ENCDO605ZCF;extended_md.collated.donors=ENCDO605ZCF;extended_md.accession=ENCSR214QEO;extended_md.biosample.ids=ENCBS022EQP;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=91;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap_Enhancers Large intestine ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • HFF-Myc NGEPMWIXYQBSHN • EpiMap33536621 ChromHMM HFF-Myc Chromatin states Show metadata Download track Track metadata identifier NGEPMWIXYQBSHN data_source EpiMap Download track Download number_of_intervals 427,801 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type HFF-Myc biosample_type Cell line biosample_term_id EFO:0005710 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,170,494 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00697_ENCODE_All_hg38.bed.gz processed_file_md5 8dc57259622f56ec21a59187167fc6d7 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00697_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00697_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00697_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00697_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00697_18_CALLS_segments.bed.gz raw_file_md5 00960504cb0c1d7610b9c58de31f4bd2 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=HFF-Myc originated from foreskin fibroblast;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00697;extended_md.donor.ids=ENCDO232AAA;extended_md.collated.donors=ENCDO232AAA;extended_md.accession=ENCSR000DUK,ENCSR000ENR;extended_md.biosample.ids=ENCBS411AMC,ENCBS553ENC;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=newborn;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0005710;is_hg38_lifted=no system_category Integumentary life_stage Newborn track_name EpiMap HFF-Myc ChromHMM consolidated chromatin states (bed9) [Life stage: Newborn] [Chromatin states]
consolidated • Kidney NGEPMWJQUZUSMU • EpiMap33536621 ChromHMM Kidney Chromatin states Show metadata Download track Track metadata identifier NGEPMWJQUZUSMU data_source EpiMap Download track Download number_of_intervals 413,367 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,031,412 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01518_Roadmap_2021_All_hg38.bed.gz processed_file_md5 6e93b1bb3f8e54de83c4a2369d2f6680 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01518_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01518_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01518_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01518_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01518_18_CALLS_segments.bed.gz raw_file_md5 dbfc45225a14d8e384e59477f5141d8e data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=right kidney male embryo (96 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01518;extended_md.donor.ids=ENCDO817EKT;extended_md.collated.donors=ENCDO817EKT;extended_md.accession=ENCSR670ZSA;extended_md.biosample.ids=ENCBS697UKL;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=96;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap Kidney ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • H1-hESC NGEPMWJSNG4KCE • EpiMap33536621 ChromHMM H1-hESC Chromatin states Show metadata Download track Track metadata identifier NGEPMWJSNG4KCE data_source EpiMap Download track Download number_of_intervals 589,887 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,709,876 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00478_Roadmap_2015_All_hg38.bed.gz processed_file_md5 f22f14fff4268e5deee605f2786ac8db wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00478_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00478_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00478_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00478_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00478_18_CALLS_segments.bed.gz raw_file_md5 9f7cf3e58f7ee52417840e3aaf430a2f data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=H1-hESC;tissue_of_origin=Embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00478;extended_md.donor.ids=ENCDO000AAW;extended_md.collated.donors=ENCDO000AAW;extended_md.accession=ENCSR441UHO,ENCSR186OBR,ENCSR815LBP,ENCSR571IIS,ENCSR000ANA,ENCSR891KGZ,ENCSR000ANB,ENCSR000ANC,ENCSR000AND,ENCSR675FLJ,ENCSR000ALU,ENCSR301HRV,ENCSR000ANP,ENCSR395USV,ENCSR728SZE,ENCSR814XPE,ENCSR952GVX,ENCSR880SUY,ENCSR925LJZ,ENCSR794OFW,ENCSR000APX,ENCSR000APY,ENCSR000APZ,ENCSR848DUN,ENCSR057BTG,ENCSR326NQF,ENCSR322MEI,ENCSR768FWX,ENCSR216OGD,ENCSR739BZR,ENCSR003SSR,ENCSR271TFS,ENCSR442DGE,ENCSR364BKW,ENCSR000EMU,ENCSR038PFD,ENCSR000AMG,ENCSR000AMH,ENCSR130EML,ENCSR883AQJ,ENCSR496DCY,ENCSR703KXH,ENCSR991BTY,ENCSR687FDK,ENCSR019SQX,ENCSR858BOF,ENCSR476KTK,ENCSR813CTI,ENCSR631RJR,ENCSR443YAS,ENCSR928HYM,ENCSR000EJN,ENCSR462XRE,ENCSR161NON;extended_md.biosample.ids=ENCBS780AAA,ENCBS977TKX,ENCBS364BFI,ENCBS111ENC,ENCBS945MCY,ENCBS977TKX,ENCBS479XUT,ENCBS253TYD,ENCBS718AAA,ENCBS706WYC,ENCBS977TKX,ENCBS929BKG,ENCBS945MCY,ENCBS428NIG,ENCBS626BQK,ENCBS982HXP,ENCBS717WTB,ENCBS945MCY,ENCBS011NFB,ENCBS984IPH,ENCBS083WOY,ENCBS285QSX,ENCBS055BDT,ENCBS479XUT,ENCBS409PYK,ENCBS103ZIA,ENCBS740OND,ENCBS534NMZ,ENCBS899NYB,ENCBS497CZZ,ENCBS952IPA,ENCBS984IPH,ENCBS534NMZ,ENCBS368BPP,ENCBS497CZZ,ENCBS055DBZ,ENCBS368BPP,ENCBS819TBN,ENCBS081AUS,ENCBS534NMZ,ENCBS081AUS,ENCBS570AYT,ENCBS513BIK,ENCBS282MUP,ENCBS215WGD;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap H1-hESC ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Neurosphere NGEPMWJZ4IIGB5 • EpiMap33536621 ChromHMM Neurosphere Chromatin states Show metadata Download track Track metadata identifier NGEPMWJZ4IIGB5 data_source EpiMap Download track Download number_of_intervals 691,894 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Neurosphere biosample_type Stem cell biosample_term_id NCIT:C172261 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 6,728,748 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01379_Roadmap_2015_All_hg38.bed.gz processed_file_md5 f96ea711509f8d17d6cdeeb516385c8a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01379_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01379_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01379_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01379_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01379_18_CALLS_segments.bed.gz raw_file_md5 30dce9d08f2152456d6d48fe949562db data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=neurosphere female embryo (17 weeks) originated from ganglionic eminence;tissue_of_origin=Embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01379;extended_md.donor.ids=ENCDO030VWZ,ENCDO981EWY;extended_md.collated.donors=ENCDO981EWY,ENCDO030VWZ;extended_md.accession=ENCSR426CZM,ENCSR127MFA,ENCSR568OLP,ENCSR741FTW,ENCSR453XEY,ENCSR409RGJ,ENCSR130PLZ,ENCSR028IND,ENCSR444TQQ;extended_md.biosample.ids=ENCBS368XNQ,ENCBS627BFF;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=17;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=NTR:0000427;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap Neurosphere ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • GM12865 NGEPMWKJF577LH • EpiMap Enhancers33536621 ChromHMM GM12865 Enhancer Show metadata Download track Track metadata identifier NGEPMWKJF577LH data_source EpiMap_Enhancers Download track Download number_of_intervals 125,581 bp_covered 97,799,600 output_type enhancer chromatin states genome_build hg38 cell_type GM12865 biosample_type Cell line biosample_term_id EFO:0005338 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,170,840 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00428_ENCODE_Enh_hg38.bed.gz processed_file_md5 9135c69219fa65888d578284016dd04f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00428_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00428_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00428_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00428_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00428_18_CALLS_segments.bed.gz raw_file_md5 b6f2853d8c012d5252125cb15734067b data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=GM12865;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00428;extended_md.donor.ids=ENCDO000ABP;extended_md.collated.donors=ENCDO000ABP;extended_md.accession=ENCSR000DRC,ENCSR000EMS;extended_md.biosample.ids=ENCBS710IXP,ENCBS885AEZ,ENCBS073XSW,ENCBS209AAA;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0005338;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap_Enhancers GM12865 ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Cerebellum NGEPMWKTIPPNEI • EpiMap33536621 ChromHMM Cerebellum Chromatin states Show metadata Download track Track metadata identifier NGEPMWKTIPPNEI data_source EpiMap Download track Download number_of_intervals 378,033 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Cerebellum biosample_type Tissue biosample_term_id UBERON:0002037 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,696,655 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00206_ENCODE_All_hg38.bed.gz processed_file_md5 b2adb6dba9bb15c95cd7f8a7078331b8 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00206_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00206_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00206_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00206_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00206_18_CALLS_segments.bed.gz raw_file_md5 8aaadbcc189dea19a35218535f5da516 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=cerebellum male adult (27 years) and male adult (35 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00206;extended_md.donor.ids=ENCDO007AAA,ENCDO006AAA;extended_md.collated.donors=ENCDO007AAA,ENCDO006AAA;extended_md.accession=ENCSR000EIJ;extended_md.biosample.ids=ENCBS013ENC,ENCBS012ENC;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=27,35;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap Cerebellum ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Ecto neural progenitor cell NGEPMWLFZYNLKN • EpiMap Enhancers33536621 ChromHMM Ecto neural progenitor cell Enhancer Show metadata Download track Track metadata identifier NGEPMWLFZYNLKN data_source EpiMap_Enhancers Download track Download number_of_intervals 56,802 bp_covered 36,818,600 output_type enhancer chromatin states genome_build hg38 cell_type Ecto neural progenitor cell biosample_type In vitro differentiated cells biosample_term_id CL:0011020 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 549,638 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00272_ENCODE_Enh_hg38.bed.gz processed_file_md5 c1267417ec68a1a4c5ecf1ac84101862 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00272_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00272_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00272_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00272_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00272_18_CALLS_segments.bed.gz raw_file_md5 b7d4520bda7fd5769b0ca2c903d2130c data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=ecto neural progenitor cell originated from H9;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00272;extended_md.donor.ids=ENCDO222AAA;extended_md.collated.donors=ENCDO222AAA;extended_md.accession=ENCSR360XIS;extended_md.biosample.ids=ENCBS752TEN,ENCBS946LBI;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=5;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=NTR:0000474;is_hg38_lifted=no system_category Nervous life_stage Embryonic track_name EpiMap_Enhancers Ecto neural progenitor cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Heart NGEPMWLM3G3DGE • EpiMap Enhancers33536621 ChromHMM Heart Enhancer Show metadata Download track Track metadata identifier NGEPMWLM3G3DGE data_source EpiMap_Enhancers Download track Download number_of_intervals 97,832 bp_covered 69,371,400 output_type enhancer chromatin states genome_build hg38 cell_type Heart biosample_type Tissue biosample_term_id NCIT:C12727 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 920,481 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00520_ENCODE_Enh_hg38.bed.gz processed_file_md5 c34bac5d944c7d930031914bc968d1ab wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00520_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00520_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00520_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00520_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00520_18_CALLS_segments.bed.gz raw_file_md5 fc7492caaaed7d41fcedfdd297d24495 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=heart male embryo (72 days) and male embryo (76 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00520;extended_md.donor.ids=ENCDO647EYG,ENCDO300THQ;extended_md.collated.donors=ENCDO647EYG,ENCDO300THQ;extended_md.accession=ENCSR705CNJ;extended_md.biosample.ids=ENCBS619VKQ,ENCBS486AQS;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=72,76;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name EpiMap_Enhancers Heart ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Endothelial cell NGEPMWLMHFWZNH • EpiMap33536621 ChromHMM Endothelial cell Chromatin states Show metadata Download track Track metadata identifier NGEPMWLMHFWZNH data_source EpiMap Download track Download number_of_intervals 537,871 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,228,255 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00296_ENCODE_2012_All_hg38.bed.gz processed_file_md5 cf33271122b630fdab0e6e9e98658d87 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00296_ENCODE_2012_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00296_ENCODE_2012_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00296_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00296_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00296_18_CALLS_segments.bed.gz raw_file_md5 d5d8adacc4dab289fd0bc38c22c6f395 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=endothelial cell of umbilical vein male newborn;tissue_of_origin=Umbilical vein;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00296;extended_md.donor.ids=ENCDO342AAA,ENCDO551FXN;extended_md.collated.donors=ENCDO342AAA,ENCDO551FXN;extended_md.accession=ENCSR000ASC,ENCSR000AKK,ENCSR000ATB,ENCSR000AKL,ENCSR000ASD,ENCSR000AKM,ENCSR000DVM,ENCSR000DVN,ENCSR000AKN,ENCSR000DVO,ENCSR000ALB,ENCSR000ALC,ENCSR000ALD,ENCSR000ALE,ENCSR000ALF,ENCSR578QSO;extended_md.biosample.ids=ENCBS500EJQ,ENCBS717AAA,ENCBS741UNQ,ENCBS859WPH,ENCBS461LFN,ENCBS717AAA,ENCBS834QWR,ENCBS723CDM;extended_md.assay=ChIP-seq;extended_md.life.stage=newborn;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Newborn track_name EpiMap Endothelial cell ChromHMM consolidated chromatin states (bed9) [Life stage: Newborn] [Chromatin states]
consolidated • Placental basal plate NGEPMWMDTXWKPP • EpiMap Enhancers33536621 ChromHMM Placental basal plate Enhancer Show metadata Download track Track metadata identifier NGEPMWMDTXWKPP data_source EpiMap_Enhancers Download track Download number_of_intervals 87,054 bp_covered 68,449,600 output_type enhancer chromatin states genome_build hg38 cell_type Placental basal plate biosample_type Tissue biosample_term_id UBERON:8600019 tissue_category Placenta encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 815,232 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01448_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 dbc5a6003fbfaa64f5970c31b3cb98a8 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01448_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01448_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01448_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01448_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01448_18_CALLS_segments.bed.gz raw_file_md5 5f98b57d85afe6138f714ace5df26121 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=placental basal plate male embryo (38 weeks);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01448;extended_md.donor.ids=ENCDO974LFM;extended_md.collated.donors=ENCDO974LFM;extended_md.accession=ENCSR629RBC,ENCSR066GUY,ENCSR345QKG;extended_md.biosample.ids=ENCBS214OGS;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=38;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=NTR:0003013;is_hg38_lifted=no system_category Placental life_stage Embryonic track_name EpiMap_Enhancers Placental basal plate ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Peripheral blood mononuclear cell NGEPMWOUWX5OFV • EpiMap33536621 ChromHMM Peripheral blood mononuclear cell Chromatin states Show metadata Download track Track metadata identifier NGEPMWOUWX5OFV data_source EpiMap Download track Download number_of_intervals 349,260 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Peripheral blood mononuclear cell biosample_type Primary cell biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,402,938 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01420_Roadmap_2015_All_hg38.bed.gz processed_file_md5 1a8435947af66bc9efa52daed17d3ec2 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01420_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01420_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01420_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01420_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01420_18_CALLS_segments.bed.gz raw_file_md5 2dab366003648857e2f4b99458733653 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=peripheral blood mononuclear cell male adult (27 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01420;extended_md.donor.ids=ENCDO250QGI;extended_md.collated.donors=ENCDO250QGI;extended_md.accession=ENCSR336ZSZ,ENCSR389IVA,ENCSR969DAF,ENCSR443SLY;extended_md.biosample.ids=ENCBS206BHY;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=27;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap Peripheral blood mononuclear cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]