Anterior cingulate cortex BA24 NGADB4NIK2MZJI • ATACdb v1.03 ATAC-seq Anterior cingulate cortex BA24 Accessible chromatin Show metadata identifier NGADB4NIK2MZJI data_source ATACdb_v1.03 Download track Download number_of_intervals 24,794 bp_covered 8,953,350 output_type accessible chromatin region genome_build hg38 cell_type Anterior cingulate cortex BA24 biosample_type Not applicable biosample_term_id UBERON:0009835 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 771,749 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0528_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 9bb7b4d6342f0df005d1b0aee56b310e wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0528_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0528_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0528.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0528.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 9094e75ce6dacfa098bea3a0c8c6e021 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0528;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=anterior cingulate cortex;Cancer_Type=Other;Region_Number=24803;Length=8956.263 kb;GEO_SRA=SRR5367812;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwan system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Anterior cingulate cortex BA24 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
FL3 NGADB4OKE5S3QZ • ATACdb v1.03 ATAC-seq FL3 TFBS Show metadata identifier NGADB4OKE5S3QZ data_source ATACdb_v1.03 Download track Download number_of_intervals 220,733 bp_covered 3,033,511 output_type transcription factor binding sites genome_build hg38 cell_type FL3 biosample_type Cell line biosample_term_id Not available tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 8,185,554 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1150_hg38_motif_binding_sites.bed.gz processed_file_md5 815687bced1137d79faa158efa707789 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1150_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1150_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1150;Biosample_Type=Cell Line;Tissue_Type=Fibroblast;Biosample_Name=FL3;Cancer_Type=Other;Region_Number=82804;Length=46345.158 kb;GEO_SRA=SRR3066451;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 FL3 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
HFF NGADB4OWVL2MON • ATACdb v1.03 ATAC-seq HFF Accessible chromatin Show metadata identifier NGADB4OWVL2MON data_source ATACdb_v1.03 Download track Download number_of_intervals 57,060 bp_covered 24,797,561 output_type accessible chromatin region genome_build hg38 cell_type HFF biosample_type Cell line biosample_term_id CL:1001608 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,869,326 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0682_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 15548f379965b97da54c06f0cb7bfbf1 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0682_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0682_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0682.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0682.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 0f65b158c96845c1e9528bb63d179138 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0682;Biosample_Type=Cell Line;Tissue_Type=Foreskin;Biosample_Name=HFF;Cancer_Type=Normal;Region_Number=57126;Length=24827.192 kb;GEO_SRA=SRR5856846;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system_category Integumentary life_stage Unknown track_name ATACdb_v1.03 HFF ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
LNCAP NGADB4OZB6YTM5 • ATACdb v1.03 ATAC-seq LNCAP Accessible chromatin Show metadata identifier NGADB4OZB6YTM5 data_source ATACdb_v1.03 Download track Download number_of_intervals 1,256 bp_covered 552,171 output_type accessible chromatin region genome_build hg38 cell_type LNCAP biosample_type Cell line biosample_term_id EFO:0002071 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 39,486 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1193_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 e645374adac3c92d12d6e895791de0af wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1193_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1193_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1193.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1193.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 0e672d621b0f37c64d87d1a54af9dd4c data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1193;Biosample_Type=Cell Line;Tissue_Type=Prostate;Biosample_Name=LNCaP;Cancer_Type=Adenocarcinoma;Region_Number=1266;Length=548.138 kb;GEO_SRA=GSM1708260;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.o system_category Reproductive life_stage Unknown track_name ATACdb_v1.03 LNCAP ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Peripheral mononucleated cell NGADB4P4L54MWV • ATACdb v1.03 ATAC-seq Peripheral mononucleated cell Accessible chromatin Show metadata identifier NGADB4P4L54MWV data_source ATACdb_v1.03 Download track Download number_of_intervals 22,040 bp_covered 14,866,239 output_type accessible chromatin region genome_build hg38 cell_type Peripheral mononucleated cell biosample_type Cell line biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 754,998 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1426_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 9f12821df3042c6962d1d515f3f6f205 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1426_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1426_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1426.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1426.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 b5ed64542a5f3da91d97233dc9f5c909 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1426;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=22086;Length=14906.059 kb;GEO_SRA=SRR5785383;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwan system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Peripheral mononucleated cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
UCLA1 hESCs NGADB4PE3DD2HO • ATACdb v1.03 ATAC-seq UCLA1 hESCs TFBS Show metadata identifier NGADB4PE3DD2HO data_source ATACdb_v1.03 Download track Download number_of_intervals 133,132 bp_covered 1,757,700 output_type transcription factor binding sites genome_build hg38 cell_type UCLA1 hESCs biosample_type Stem cell biosample_term_id CL:0002322 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 4,045,870 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0632_hg38_motif_binding_sites.bed.gz processed_file_md5 cf0fce8cacedce8bb9e98bba6614ca90 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0632_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0632_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0632;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=Primed SSEA4+ UCLA1 hESCs;Cancer_Type=Normal;Region_Number=22461;Length=11665.733 kb;GEO_SRA=SRR5815107;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.l system_category Embryo life_stage Embryonic track_name ATACdb_v1.03 UCLA1 hESCs ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
Peripheral mononucleated cell NGADB4PE5LYMAS • ATACdb v1.03 ATAC-seq Peripheral mononucleated cell Accessible chromatin Show metadata identifier NGADB4PE5LYMAS data_source ATACdb_v1.03 Download track Download number_of_intervals 2,181 bp_covered 726,159 output_type accessible chromatin region genome_build hg38 cell_type Peripheral mononucleated cell biosample_type Cell line biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 60,581 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1411_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 d48ccc244f2844683fd420940b31e26c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1411_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1411_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1411.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1411.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 e5a6f983c3082d0e973d4da00d4d843a data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1411;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=2181;Length=726.153 kb;GEO_SRA=SRR5785358;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwangla system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Peripheral mononucleated cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
HCASMC NGADB4PF4Z5RMH • ATACdb v1.03 ATAC-seq HCASMC TFBS Show metadata identifier NGADB4PF4Z5RMH data_source ATACdb_v1.03 Download track Download number_of_intervals 294,574 bp_covered 4,036,570 output_type transcription factor binding sites genome_build hg38 cell_type HCASMC biosample_type Tissue biosample_term_id CL:0002592 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 10,229,982 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1324_hg38_motif_binding_sites.bed.gz processed_file_md5 56a91650ad7a8101dfd1cf804c9c06ef wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1324_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1324_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1324;Biosample_Type=Tissue;Tissue_Type=Blood;Biosample_Name=HCASMC;Cancer_Type=Coronary artery disease;Region_Number=67441;Length=51405.983 kb;GEO_SRA=SRR8216257;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwa system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 HCASMC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Myeloid dendritic cell NGADB4PMXG2E54 • ATACdb v1.03 ATAC-seq Myeloid dendritic cell Accessible chromatin Show metadata identifier NGADB4PMXG2E54 data_source ATACdb_v1.03 Download track Download number_of_intervals 17,978 bp_covered 6,071,422 output_type accessible chromatin region genome_build hg38 cell_type Myeloid dendritic cell biosample_type Not applicable biosample_term_id CL:0000782 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 586,651 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0279_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 08fd682addfc6cbf7a420fb118814fa2 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0279_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0279_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0279.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0279.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 8f4df2e510ba9599fd60e9d34b3a1fbf data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0279;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Myeloid_DCs;Cancer_Type=Normal;Region_Number=18023;Length=6096.321 kb;GEO_SRA=SRR7650810;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Myeloid dendritic cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
HT1080 NGADB4PQQOU4ZT • ATACdb v1.03 ATAC-seq HT1080 TFBS Show metadata identifier NGADB4PQQOU4ZT data_source ATACdb_v1.03 Download track Download number_of_intervals 187,642 bp_covered 2,544,710 output_type transcription factor binding sites genome_build hg38 cell_type HT1080 biosample_type Cell line biosample_term_id EFO:0002059 tissue_category Connective Tissue encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 6,622,174 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1125_hg38_motif_binding_sites.bed.gz processed_file_md5 999facb96fd9967a62ac5547ceded265 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1125_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1125_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1125;Biosample_Type=Cell Line;Tissue_Type=Connective tissue;Biosample_Name=HT1080;Cancer_Type=Fibroscarcoma;Region_Number=58478;Length=27946.698 kb;GEO_SRA=SRR2999323;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.li system_category Skeletal life_stage Unknown track_name ATACdb_v1.03 HT1080 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Anterior cingulate cortex BA24 NGADB4QHZLD2HX • ATACdb v1.03 ATAC-seq Anterior cingulate cortex BA24 TFBS Show metadata identifier NGADB4QHZLD2HX data_source ATACdb_v1.03 Download track Download number_of_intervals 106,379 bp_covered 1,442,497 output_type transcription factor binding sites genome_build hg38 cell_type Anterior cingulate cortex BA24 biosample_type Not applicable biosample_term_id UBERON:0009835 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 3,786,387 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0498_hg38_motif_binding_sites.bed.gz processed_file_md5 afd744c81d7dd39269da2b484c8a6fb1 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0498_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0498_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0498;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=anterior cingulate cortex;Cancer_Type=Other;Region_Number=48269;Length=18752.818 kb;GEO_SRA=SRR5367767;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwa system_category Nervous life_stage Unknown track_name ATACdb_v1.03 Anterior cingulate cortex BA24 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Hematopoietic progenitor cell NGADB4RT2I63CI • ATACdb v1.03 ATAC-seq Hematopoietic progenitor cell TFBS Show metadata identifier NGADB4RT2I63CI data_source ATACdb_v1.03 Download track Download number_of_intervals 79,404 bp_covered 1,047,433 output_type transcription factor binding sites genome_build hg38 cell_type Hematopoietic progenitor cell biosample_type Primary cell biosample_term_id NCIT:C12551 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 2,408,937 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1359_hg38_motif_binding_sites.bed.gz processed_file_md5 5c37603caf84e038ff9593af9f8bf02c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1359_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1359_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1359;Biosample_Type=Primary Cell;Tissue_Type=Peripheral blood;Biosample_Name=HSPC;Cancer_Type=Normal;Region_Number=12453;Length=7078.345 kb;GEO_SRA=SRR6811670;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwangl system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Hematopoietic progenitor cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
CD34+ HSPC NGADB4SKLH6ELP • ATACdb v1.03 ATAC-seq CD34+ HSPC Accessible chromatin Show metadata identifier NGADB4SKLH6ELP data_source ATACdb_v1.03 Download track Download number_of_intervals 11,654 bp_covered 6,397,141 output_type accessible chromatin region genome_build hg38 cell_type CD34+ HSPC biosample_type Primary cell biosample_term_id CL:0000037 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 393,502 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1235_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 c1878193ab11fcde21daf96b9d69fa54 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1235_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1235_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1235.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1235.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 94095193f8afeccdbc3b46e13a1b68c6 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_1235;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD34+ HSPC;Cancer_Type=Normal;Region_Number=11699;Length=6417.19 kb;GEO_SRA=SRR2453159;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 CD34+ HSPC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
HCASMC NGADB4SPWGQXRF • ATACdb v1.03 ATAC-seq HCASMC TFBS Show metadata identifier NGADB4SPWGQXRF data_source ATACdb_v1.03 Download track Download number_of_intervals 73,290 bp_covered 970,126 output_type transcription factor binding sites genome_build hg38 cell_type HCASMC biosample_type Not applicable biosample_term_id CL:0002592 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 2,268,950 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1200_hg38_motif_binding_sites.bed.gz processed_file_md5 de840eef4fe2c6aae0124f49022d22ec wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1200_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1200_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_1200;Biosample_Type=Other;Tissue_Type=Other;Biosample_Name=HCASMC;Cancer_Type=Hemoglobinopathies;Region_Number=14591;Length=6413.956 kb;GEO_SRA=GSM1939570;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.o system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 HCASMC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Cartilage NGADB4TBOHR3F3 • ATACdb v1.03 ATAC-seq Cartilage Accessible chromatin Show metadata identifier NGADB4TBOHR3F3 data_source ATACdb_v1.03 Download track Download number_of_intervals 45,356 bp_covered 20,806,412 output_type accessible chromatin region genome_build hg38 cell_type Cartilage biosample_type Tissue biosample_term_id EFO:0000949 tissue_category Connective Tissue encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 1,467,373 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0166_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 b9fbea087ff0ddb77d4e32470ea7d6b1 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0166_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0166_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0166.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0166.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 6aa0ebccd4f976d7455b7bb1ac1bb2a2 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0166;Biosample_Type=Tissue;Tissue_Type=Catilage;Biosample_Name=Catilage;Cancer_Type=Normal;Region_Number=45430;Length=20852.781 kb;GEO_SRA=SRR6391858;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system_category Skeletal life_stage Unknown track_name ATACdb_v1.03 Cartilage ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
RWPE1 NGADB4TMDBHO3V • ATACdb v1.03 ATAC-seq RWPE1 Accessible chromatin Show metadata identifier NGADB4TMDBHO3V data_source ATACdb_v1.03 Download track Download number_of_intervals 10,385 bp_covered 3,801,503 output_type accessible chromatin region genome_build hg38 cell_type RWPE1 biosample_type Cell line biosample_term_id EFO:0002323 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 334,980 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0589_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 30b07c42ebc504c4d6559b74c173748b wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0589_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0589_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0589.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0589.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 ca907e8665a487c0b60ac9bda9b3a267 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0589;Biosample_Type=Cell Line;Tissue_Type=Prostate;Biosample_Name=RWPE1;Cancer_Type=Normal;Region_Number=10387;Length=3802.268 kb;GEO_SRA=SRR7161070;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system_category Reproductive life_stage Unknown track_name ATACdb_v1.03 RWPE1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Memory natural killer cell NGADB4U6HB4GBO • ATACdb v1.03 ATAC-seq Memory natural killer cell TFBS Show metadata identifier NGADB4U6HB4GBO data_source ATACdb_v1.03 Download track Download number_of_intervals 98,762 bp_covered 1,319,552 output_type transcription factor binding sites genome_build hg38 cell_type Memory natural killer cell biosample_type Not applicable biosample_term_id CL:0000623 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 3,072,866 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0278_hg38_motif_binding_sites.bed.gz processed_file_md5 61b76b20559f50868cce2f63696384aa wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0278_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0278_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0278;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Memory_NK;Cancer_Type=Normal;Region_Number=20030;Length=9393.478 kb;GEO_SRA=SRR7650809;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Memory natural killer cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
HeLa NGADB4UL6CURPJ • ATACdb v1.03 ATAC-seq HeLa Accessible chromatin Show metadata identifier NGADB4UL6CURPJ data_source ATACdb_v1.03 Download track Download number_of_intervals 20,815 bp_covered 5,611,123 output_type accessible chromatin region genome_build hg38 cell_type HeLa biosample_type Cell line biosample_term_id EFO:0001185 tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 674,225 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0164_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 88db4fcf5c86898bb29525679a4cd785 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0164_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0164_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0164.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0164.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 c15e523578643e5b5981d4859308f681 data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0164;Biosample_Type=Cell Line;Tissue_Type=Cervix;Biosample_Name=HeLa;Cancer_Type=Cervix adenocarcinoma;Region_Number=20862;Length=5641.227 kb;GEO_SRA=SRR8102134;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwan system_category Reproductive life_stage Unknown track_name ATACdb_v1.03 HeLa ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Induced pluripotent stem cell NGADB4V5YCBL2L • ATACdb v1.03 ATAC-seq Induced pluripotent stem cell TFBS Show metadata identifier NGADB4V5YCBL2L data_source ATACdb_v1.03 Download track Download number_of_intervals 95,091 bp_covered 1,301,438 output_type transcription factor binding sites genome_build hg38 cell_type Induced pluripotent stem cell biosample_type Stem cell biosample_term_id EFO:0004905 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed bed3+11 ATACdb-lifted file_size 3,634,169 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0776_hg38_motif_binding_sites.bed.gz processed_file_md5 e34666aa0e49102a8134550520d53830 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0776_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0776_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ raw_file_md5 b279988d9f061984cc7e422702286f7d data_category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites track_description version=v1.03;Sample_ID=Sample_0776;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA19160;Cancer_Type=Other;Region_Number=41499;Length=23154.029 kb;GEO_SRA=SRR6412494;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system_category Stem Cell life_stage Unknown track_name ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Memory B cell NGADB4V6GBWZYA • ATACdb v1.03 ATAC-seq Memory B cell Accessible chromatin Show metadata identifier NGADB4V6GBWZYA data_source ATACdb_v1.03 Download track Download number_of_intervals 28,755 bp_covered 16,323,905 output_type accessible chromatin region genome_build hg38 cell_type Memory B cell biosample_type Not applicable biosample_term_id CL:0000787 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Not applicable assay ATAC-seq file_format bed narrowPeak-lifted file_size 979,947 downloaded_date 10/03/2023 release_date 10/18/2021 date_added_to_filer 05/20/2026 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0245_accessible_chromatin_regions_hg38.bed.gz processed_file_md5 a604e9d2d2d802c683b41564b473244c wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0245_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0245_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ link_out_url https://bio.liclab.net/ATACdb/ raw_file_url https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0245.bed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0245.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ raw_file_md5 833381e74a99de0c09dabfbe6739fdda data_category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region track_description version=v1.03;Sample_ID=Sample_0245;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Mem_B;Cancer_Type=Normal;Region_Number=28840;Length=16362.565 kb;GEO_SRA=SRR7650775;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system_category Cardiovascular life_stage Unknown track_name ATACdb_v1.03 Memory B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]