CTBP1 • MCF-7 NGFTBV4U367R75 • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBV4U367R75 data_source Factorbook Download track Download number_of_intervals 11,724 bp_covered 246,204 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR636EYA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTBP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 225,395 downloaded_date 07/10/2024 release_date 04/21/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF882ZZZ_AACCDGTTYKWCCDGTTYBNC_sorted.bed.gz processed_file_md5 520a73c90b12acedff2ff31c3b5aa686 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF882ZZZ_AACCDGTTYKWCCDGTTYBNC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF882ZZZ_AACCDGTTYKWCCDGTTYBNC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF882ZZZ_AACCDGTTYKWCCDGTTYBNC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF882ZZZ_AACCDGTTYKWCCDGTTYBNC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f0ea81bc02d1fb13d52ebf6ca5a7606f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF882ZZZ;ENCODE_bigBed_id=ENCFF969VBY;PMID=34755879;Motif_sequence=AACCDGTTYKWCCDGTTYBNC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTBP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR636EYA] [Life stage: Adult] [TFBS]
CTBP2 • H1-hESC NGENC6NLJMCDH3 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENC6NLJMCDH3 data_source ENCODE Download track Download number_of_intervals 536 bp_covered 281,788 output_type IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000EUO biological_replicate 2 technical_replicate 2_1 antibody CTBP2 assay TF ChIP-seq file_format bed narrowPeak file_size 9,826 downloaded_date 06/12/2022 release_date 02/12/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF331MOQ.bed.gz processed_file_md5 24db8dfb28054f3e0bc4fad548050b5c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF331MOQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF331MOQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF331MOQ/@@download/ENCFF331MOQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF331MOQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c4ac1ab044292eb85b54ffddede61aee data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM935463,UCSC-ENCODE-hg19:wgEncodeEH001767;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 2) TF ChIP-seq CTBP2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EUO] [Life stage: Embryonic] [TF ChIP-seq peaks]
CTBP2 • H1-hESC NGENCEK75VVXFK • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCEK75VVXFK data_source ENCODE Download track Download number_of_intervals 1,789 bp_covered 936,997 output_type IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000EUO biological_replicate 1 technical_replicate 1_1 antibody CTBP2 assay TF ChIP-seq file_format bed narrowPeak file_size 31,060 downloaded_date 06/12/2022 release_date 02/12/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF145FOC.bed.gz processed_file_md5 37c4bd4bc2889992cfc0223d29580d2c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF145FOC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF145FOC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF145FOC/@@download/ENCFF145FOC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF145FOC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3896693d06fec536a00869bc7f754878 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM935463,UCSC-ENCODE-hg19:wgEncodeEH001767;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1) TF ChIP-seq CTBP2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EUO] [Life stage: Embryonic] [TF ChIP-seq peaks]
CTBP2 • H1-hESC NGENCEX2TEQMNI • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCEX2TEQMNI data_source ENCODE Download track Download number_of_intervals 5,242 bp_covered 3,047,166 output_type conservative IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000EUO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTBP2 assay TF ChIP-seq file_format bed narrowPeak file_size 92,041 downloaded_date 06/12/2022 release_date 02/12/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF154HBR.bed.gz processed_file_md5 686bc34df7c60e3c785d19e89a710e38 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF154HBR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF154HBR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF154HBR/@@download/ENCFF154HBR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF154HBR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1ff8befd086cb6f6ceed861c5b1146a4 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM935463,UCSC-ENCODE-hg19:wgEncodeEH001767;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq CTBP2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EUO] [Life stage: Embryonic] [TF ChIP-seq peaks]
CTBP2 • H1-hESC NGENCFL3ONAG6J • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCFL3ONAG6J data_source ENCODE Download track Download number_of_intervals 8,117 bp_covered 4,740,647 output_type IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000EUO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTBP2 assay TF ChIP-seq file_format bed narrowPeak file_size 141,747 downloaded_date 06/12/2022 release_date 02/12/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF329MAX.bed.gz processed_file_md5 a11c6c08a87685522d59f5ac099d209e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF329MAX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF329MAX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF329MAX/@@download/ENCFF329MAX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF329MAX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f4ad6477f4e64ab1b2eb8fa7344fd588 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM935463,UCSC-ENCODE-hg19:wgEncodeEH001767;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.7.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq CTBP2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EUO] [Life stage: Embryonic] [TF ChIP-seq peaks]
CTCF • WTC11 NGENC22V6WNQYJ • ENCODE22955616 | 41168159 | 31713622 ChIA-PET WTC11 Chromatin interactions Show metadata Download track Track metadata identifier NGENC22V6WNQYJ data_source ENCODE Download track Download number_of_intervals 1,949,888 bp_covered 2,301,067,637 output_type chromatin interactions genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR016VPZ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay ChIA-PET file_format bed bed4+19 interact file_size 72,855,679 downloaded_date 09/20/2025 release_date 09/01/2021 date_added_to_filer 10/27/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF551YHB.bed.gz processed_file_md5 375535b32871a77eab5a37ad00808805 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF551YHB.bed.gz -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF551YHB.bed.gz.tbi -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ link_out_url https://www.encodeproject.org/ raw_file_url https://www.encodeproject.org/files/ENCFF551YHB/@@download/ENCFF551YHB.bedpe.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF551YHB.bedpe.gz -P FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ raw_file_md5 89fc1d95394e6e8a56fba72ffd09ab38 data_category Chromatin interactions Genomic feature type ChIA-PET chromatin interactions track_description version=2024;Biosample_summary=Homo sapiens WTC11;Lab=Charles Lee;ENCODE_internal_tags=NR;Life_stage_age=adult 30 years;Reference=NR;External_resources=4DN:4DNESHWX9JLY,GEO:GSE242575;Project=ENCODE;Award=3UM1HG009409-04S1;Experiment_date_released=2021-11-03;Submitted_track_name=LHW0007V.e500.clusters.cis.BE3.gz;ENCODE_preferred_default=true;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=connective tissue cell,fibroblast,induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=Lab custom GRCh38;GM=NR;Fragmentation_method=sonication (Branson Sonifier 250);Library_size=300-600;schema=BED4+19;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR016VPZ] [Life stage: Adult] [Chromatin interactions]
CTCF • 22Rv1 NGENC22YQFUYFY • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq 22Rv1 TF Show metadata Download track Track metadata identifier NGENC22YQFUYFY data_source ENCODE Download track Download number_of_intervals 85,038 bp_covered 56,489,588 output_type conservative IDR thresholded peaks genome_build hg38 cell_type 22Rv1 biosample_type Cell line biosample_term_id EFO:0002095 tissue_category Male Reproductive encode_experiment_id ENCSR847XGE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 1,415,581 downloaded_date 07/10/2025 release_date 09/01/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF850QZG.bed.gz processed_file_md5 ff5983da05f30b4bc0a1f6a61012072d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF850QZG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF850QZG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF850QZG/@@download/ENCFF850QZG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF850QZG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 70fa5138a5227c5d78a65c49636f2217 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens 22Rv1 treated with 10 nM 17_-hydroxy-5_-androstan-3-one for 4 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=SCREEN-GRCh38:22Rv1_treated_with_17beta-hydroxy-5alpha-androstan-3-one,GEO:GSE105966,FactorBook:ENCSR847XGE;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-06-29,2016-11-30;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=22Rv1;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002095;is_hg38_lifted=no system_category Reproductive life_stage Unknown track_name ENCODE 22Rv1 (repl. 1, 2) TF ChIP-seq CTCF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR847XGE] [TF ChIP-seq peaks]
CTCF • Spleen NGENC23TZTTGNT • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Spleen TF Show metadata Download track Track metadata identifier NGENC23TZTTGNT data_source ENCODE Download track Download number_of_intervals 37,021 bp_covered 15,888,555 output_type IDR thresholded peaks genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR601FEB biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 655,795 downloaded_date 06/12/2022 release_date 09/24/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF146BOL.bed.gz processed_file_md5 3e6b10d1fb292b8d1da1d6e406a7ef6e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF146BOL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF146BOL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF146BOL/@@download/ENCFF146BOL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF146BOL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 daaed494e928fffec7b38210fc316a0f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens spleen tissue female adult (53 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=FactorBook:ENCSR601FEB,GEO:GSE143022;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-09-11,2016-11-03;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=spleen;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system,immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name ENCODE Spleen (repl. 1, 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR601FEB] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • CD4+ alpha-beta T cell NGENC2445W2TAS • ENCODE22955616 | 41168159 | 31713622 ChIA-PET CD4+ alpha-beta T cell Chromatin interactions Show metadata Download track Track metadata identifier NGENC2445W2TAS data_source ENCODE Download track Download number_of_intervals 722,210 bp_covered 536,298,641 output_type chromatin interactions genome_build hg38 cell_type CD4+ alpha-beta T cell biosample_type Primary cell biosample_term_id CL:0000624 tissue_category Blood encode_experiment_id ENCSR962FFY biological_replicate 2 technical_replicate 2_1 antibody CTCF assay ChIA-PET file_format bed bed4+19 interact file_size 31,107,196 downloaded_date 09/20/2025 release_date 07/16/2021 date_added_to_filer 10/27/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF309GVQ.bed.gz processed_file_md5 fc9c80bf40e3b96212136128294f3a59 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF309GVQ.bed.gz -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF309GVQ.bed.gz.tbi -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ link_out_url https://www.encodeproject.org/ raw_file_url https://www.encodeproject.org/files/ENCFF309GVQ/@@download/ENCFF309GVQ.bedpe.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF309GVQ.bedpe.gz -P FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ raw_file_md5 09a45d79bb10fa14c90c6cf8c201d58b data_category Chromatin interactions Genomic feature type ChIA-PET chromatin interactions track_description version=2024;Biosample_summary=Homo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 20 years;Reference=NR;External_resources=GEO:GSE187786;Project=ENCODE;Award=UM1HG009409;Experiment_date_released=2021-07-21;Submitted_track_name=LHT0039H.e500.clusters.cis.BE3.gz;ENCODE_preferred_default=false;ENCODE_biosample_term_name=activated CD4-positive, alpha-beta T cell;ENCODE_cell_slims=CD4+ T cell,leukocyte,T cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=activated CD4-positive, alpha-beta T-lymphocyte,activated CD4-positive, alpha-beta T lymphocyte,activated CD4-positive, alpha-beta T-cell;Analysis_title=Lab custom GRCh38;GM=NR;Fragmentation_method=sonication (Branson Sonifier 250);Library_size=350-600;schema=BED4+19;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000896;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR962FFY] [Life stage: Adult] [Chromatin interactions]
CTCF • GM23338 NGENC24DF3V6II • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM23338 TF Show metadata Download track Track metadata identifier NGENC24DF3V6II data_source ENCODE Download track Download number_of_intervals 71,382 bp_covered 12,606,168 output_type IDR thresholded peaks genome_build hg38 cell_type GM23338 biosample_type Cell line biosample_term_id EFO:0007950 tissue_category iPSC encode_experiment_id ENCSR932ZMX biological_replicate 1 technical_replicate 1_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 1,238,746 downloaded_date 06/12/2022 release_date 10/19/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF568TJZ.bed.gz processed_file_md5 b30444e31120833cb9b49488425359e1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF568TJZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF568TJZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF568TJZ/@@download/ENCFF568TJZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF568TJZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 39e2fd6afd217ce07f44c23bcdceba27 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM23338 originated from GM23248;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2,DREAM;Life_stage_age=adult 53 years;Reference=NR;External_resources=FactorBook:ENCSR932ZMX,GEO:GSE96477;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-06-30,2016-01-14;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM23338;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007950;is_hg38_lifted=no system_category Stem Cell life_stage Adult track_name ENCODE GM23338 (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR932ZMX] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • MCF-7 NGENC25WGNKJCM • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENC25WGNKJCM data_source ENCODE Download track Download number_of_intervals 62,499 bp_covered 10,806,128 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DMV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 1,071,157 downloaded_date 06/12/2022 release_date 09/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF414SZG.bed.gz processed_file_md5 fdada0038b72d8bc3a448ce8797618a6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF414SZG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF414SZG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF414SZG/@@download/ENCFF414SZG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF414SZG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c0d12f1872e0f377dd19cb97b6c4fbe0 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Vishwanath Iyer, UTA;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DMV,UCSC-ENCODE-hg19:wgEncodeEH000598,GEO:GSM822305;Project=ENCODE;Award=U54HG004563;Experiment_date_released=2011-03-17;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DMV] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • A549 NGENC25WOMNYDB • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENC25WOMNYDB data_source ENCODE Download track Download number_of_intervals 39,785 bp_covered 14,851,704 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR432AXE biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 727,068 downloaded_date 09/10/2024 release_date 10/02/2020 date_added_to_filer 10/01/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF051YUQ.bed.gz processed_file_md5 811f297545fb5764f60eaf92e9ea0f0b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF051YUQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF051YUQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF051YUQ/@@download/ENCFF051YUQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF051YUQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f8193dab57e030a1cc5d236412ec79dc data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE92808,FactorBook:ENCSR432AXE;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-12-20;Submitted_track_name=rep2_vs_rep3.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 2, 3) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR432AXE] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • MCF-7 NGENC25WZSFUGW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENC25WZSFUGW data_source ENCODE Download track Download number_of_intervals 54,648 bp_covered 9,051,221 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DMV biological_replicate 2 technical_replicate 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 894,321 downloaded_date 06/12/2022 release_date 09/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF480FEZ.bed.gz processed_file_md5 f971bbb6c9b645cf50f1fc389bd62ac3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF480FEZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF480FEZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF480FEZ/@@download/ENCFF480FEZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF480FEZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 354919335381769ce72e18137f2db0d0 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Vishwanath Iyer, UTA;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DMV,UCSC-ENCODE-hg19:wgEncodeEH000598,GEO:GSM822305;Project=ENCODE;Award=U54HG004563;Experiment_date_released=2011-03-17;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DMV] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • CD4+ alpha-beta memory T cell NGENC265LOV63S • ENCODE22955616 | 41168159 | 31713622 ChIA-PET CD4+ alpha-beta memory T cell Chromatin interactions Show metadata Download track Track metadata identifier NGENC265LOV63S data_source ENCODE Download track Download number_of_intervals 1,054,446 bp_covered 1,333,007,875 output_type chromatin interactions genome_build hg38 cell_type CD4+ alpha-beta memory T cell biosample_type Primary cell biosample_term_id CL:0000897 tissue_category Blood encode_experiment_id ENCSR291RCO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay ChIA-PET file_format bed bed4+19 interact file_size 42,510,001 downloaded_date 09/20/2025 release_date 07/21/2021 date_added_to_filer 10/27/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF116POO.bed.gz processed_file_md5 f414697d84831d26c3d03e304f1c183b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF116POO.bed.gz -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF116POO.bed.gz.tbi -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ link_out_url https://www.encodeproject.org/ raw_file_url https://www.encodeproject.org/files/ENCFF116POO/@@download/ENCFF116POO.bedpe.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF116POO.bedpe.gz -P FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ raw_file_md5 a982e07beff5ce422bea8d2fdde7d0b0 data_category Chromatin interactions Genomic feature type ChIA-PET chromatin interactions track_description version=2024;Biosample_summary=Homo sapiens activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 43 years;Reference=NR;External_resources=GEO:GSE187368;Project=ENCODE;Award=UM1HG009409;Experiment_date_released=2021-08-02;Submitted_track_name=LHT0048H.e500.clusters.cis.BE3.gz;ENCODE_preferred_default=false;ENCODE_biosample_term_name=activated CD4-positive, alpha-beta memory T cell;ENCODE_cell_slims=CD4+ T cell,T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=Lab custom GRCh38;GM=NR;Fragmentation_method=sonication (Branson Sonifier 250);Library_size=350-600;schema=BED4+19;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000499;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR291RCO] [Life stage: Adult] [Chromatin interactions]
CTCF • Lung NGENC27SHFENPI • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Lung TF Show metadata Download track Track metadata identifier NGENC27SHFENPI data_source ENCODE Download track Download number_of_intervals 33,654 bp_covered 14,178,653 output_type IDR thresholded peaks genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id ENCSR255SQR biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 601,070 downloaded_date 06/12/2022 release_date 07/09/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF620MAT.bed.gz processed_file_md5 5700b2aeb3d9b4ef0c7401d0ec097bee wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF620MAT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF620MAT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF620MAT/@@download/ENCFF620MAT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF620MAT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7f82c18d8e5aaff2dc293daeda0cedef data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens left lung tissue male adult (40 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 40 years;Reference=NR;External_resources=GEO:GSE175135;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-04-13,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=left lung;ENCODE_cell_slims=NR;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002168;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE Lung (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR255SQR] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • HCT116 NGENC2B5SVE5Z6 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HCT116 TF Show metadata Download track Track metadata identifier NGENC2B5SVE5Z6 data_source ENCODE Download track Download number_of_intervals 58,132 bp_covered 26,228,271 output_type IDR thresholded peaks genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR671ITY biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 988,459 downloaded_date 07/10/2025 release_date 07/20/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF087TIR.bed.gz processed_file_md5 a863c71bd84159dd57a8f30ea4d750d0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF087TIR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF087TIR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF087TIR/@@download/ENCFF087TIR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF087TIR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 497b99998bb27016aae135de2f6f4da6 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SMARCA5 treated with 1 _M 5-Phenyl-1H-indole-3-acetic acid for 6 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,Degron,RegulomeDB_2_1;Life_stage_age=adult 48 years;Reference=NR;External_resources=GEO:GSE231090;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-07-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=HCT116 cell,HCT-116 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name ENCODE HCT116 (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR671ITY] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • A549 NGENC2CHTYGTWD • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENC2CHTYGTWD data_source ENCODE Download track Download number_of_intervals 38,569 bp_covered 14,976,485 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR035OXA biological_replicate 2 technical_replicate 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 676,095 downloaded_date 06/12/2022 release_date 10/02/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF083MPX.bed.gz processed_file_md5 d2242f127fe568e490dabdeab83db746 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF083MPX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF083MPX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF083MPX/@@download/ENCFF083MPX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF083MPX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9902592f5190eb670a3f54f891047c2b data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=FactorBook:ENCSR035OXA,GEO:GSE92782;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-12-20;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR035OXA] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • Keratinocyte NGENC2EK5M3LCL • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Keratinocyte TF Show metadata Download track Track metadata identifier NGENC2EK5M3LCL data_source ENCODE Download track Download number_of_intervals 39,891 bp_covered 6,704,388 output_type IDR thresholded peaks genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR000DNC biological_replicate 2 technical_replicate 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 696,176 downloaded_date 06/12/2022 release_date 09/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF246WCO.bed.gz processed_file_md5 292e2c86282dbfbf7948581d68dccf18 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF246WCO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF246WCO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF246WCO/@@download/ENCFF246WCO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF246WCO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7a118e8c574caaa979213566846ae26d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens keratinocyte female;Lab=Vishwanath Iyer, UTA;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=SCREEN-GRCh38:keratinocyte_female_donor_ENCDO268AAA,GEO:GSM822271,UCSC-ENCODE-hg19:wgEncodeEH000559,FactorBook:ENCSR000DNC;Project=ENCODE;Award=U54HG004563;Experiment_date_released=2011-03-17,2016-06-28;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=keratinized cell of epidermis,malpighian cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000312;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name ENCODE Keratinocyte (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DNC] [TF ChIP-seq peaks]
CTCF • GM12878 NGENC2GG3MANUX • ENCODE22955616 | 41168159 | 31713622 ChIA-PET GM12878 Chromatin interactions Show metadata Download track Track metadata identifier NGENC2GG3MANUX data_source ENCODE Download track Download number_of_intervals 29,801 bp_covered 20,009,261 output_type peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR184YZV biological_replicate 1 technical_replicate 1_1 antibody CTCF assay ChIA-PET file_format bed broadPeak file_size 473,169 downloaded_date 06/12/2022 release_date 12/31/2020 date_added_to_filer 11/07/2022 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ENCFF729PES.bed.gz processed_file_md5 bad8f9d74d13ed6f71ac46e10a5d77b0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ENCFF729PES.bed.gz -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ENCFF729PES.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF729PES/@@download/ENCFF729PES.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF729PES.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b62acc4d27b6ca1e47894dcaacc30abd data_category Chromatin interactions Genomic feature type ChIA-PET CTCF peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=4DN:4DNES7IB5LY9;Project=community;Award=1U54DK107967;Experiment_date_released=2021-09-09,2020-09-28;Submitted_track_name=LHG0052H.for.BROWSER.spp.z6.broadPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+3;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR184YZV] [Life stage: Adult] [Chromatin interactions]
CTCF • MCF-7 NGENC2HM2EL4AB • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENC2HM2EL4AB data_source ENCODE Download track Download number_of_intervals 82,286 bp_covered 16,386,500 output_type optimal IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DMR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 1,475,330 downloaded_date 06/04/2018 release_date 12/16/2016 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF198DQX.bed.gz processed_file_md5 f3a84379d257ac8158c44de3a4686e86 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF198DQX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF198DQX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF198DQX/@@download/ENCFF198DQX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF198DQX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4d3ff06e0629a3c62bdbb96fffa2a29e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF optimal IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Vishwanath Iyer, UTA;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001132,FactorBook:ENCSR000DMR,GEO:GSM822308;Project=ENCODE;Award=U54HG004563;Experiment_date_released=2011-03-17;Submitted_track_name=IDR_final_optimal.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE3 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq CTCF optimal IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DMR] [Life stage: Adult] [TF ChIP-seq peaks]