CTCF • Adrenal gland NGENCCRR3ECKHI • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Adrenal gland TF Show metadata Download track Track metadata identifier NGENCCRR3ECKHI data_source ENCODE Download track Download number_of_intervals 42,734 bp_covered 17,183,941 output_type conservative IDR thresholded peaks genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR188XCX biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 752,984 downloaded_date 06/12/2022 release_date 04/12/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF176AUC.bed.gz processed_file_md5 1619f2f84e5b571ef3172ffa3d35513f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF176AUC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF176AUC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF176AUC/@@download/ENCFF176AUC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF176AUC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c735a70084d86610048198fc06c81851 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens adrenal gland tissue female adult (41 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 41 years;Reference=NR;External_resources=GEO:GSE187256;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-07-23,2020-07-06;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=adrenal gland;ENCODE_cell_slims=NR;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=glandula suprarenalis,glandula adrenalis;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name ENCODE Adrenal gland (repl. 1, 2) TF ChIP-seq CTCF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR188XCX] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • A549 NGENCCS26COQQ6 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENCCS26COQQ6 data_source ENCODE Download track Download number_of_intervals 40,841 bp_covered 16,335,228 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR432AXE biological_replicate 1 technical_replicate 1_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 708,912 downloaded_date 07/10/2025 release_date 10/02/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF464OCZ.bed.gz processed_file_md5 82b1bbe37c13dcf887e3e8bebb095b80 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF464OCZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF464OCZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF464OCZ/@@download/ENCFF464OCZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF464OCZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8440fdf1742a7555b8f10fe1460d6ac2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE92808,FactorBook:ENCSR432AXE;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-12-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR432AXE] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • MCF 10A NGENCCSVH2V2X4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF 10A TF Show metadata Download track Track metadata identifier NGENCCSVH2V2X4 data_source ENCODE Download track Download number_of_intervals 40,907 bp_covered 11,818,561 output_type IDR thresholded peaks genome_build hg38 cell_type MCF 10A biosample_type Cell line biosample_term_id EFO:0001200 tissue_category Breast encode_experiment_id ENCSR193SZD biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 704,195 downloaded_date 06/12/2022 release_date 06/06/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF988BGF.bed.gz processed_file_md5 c0a0aa74d8600f7d12bdb92dd4de6aa1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF988BGF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF988BGF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF988BGF/@@download/ENCFF988BGF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF988BGF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 29cd632e6db73f376d5ce75910e52eeb data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF 10A;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 36 years;Reference=NR;External_resources=GEO:GSE209154;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-06-09,2022-06-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MCF 10A;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001200;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF 10A (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR193SZD] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • type B pancreatic cell NGENCCSVW6N6JU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq type B pancreatic cell TF Show metadata Download track Track metadata identifier NGENCCSVW6N6JU data_source ENCODE Download track Download number_of_intervals 42,927 bp_covered 12,121,350 output_type IDR thresholded peaks genome_build hg38 cell_type type B pancreatic cell biosample_type In vitro differentiated cells biosample_term_id CL:0000169 tissue_category Pancreas encode_experiment_id ENCSR458PYQ biological_replicate 2 technical_replicate 2_1, 2_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 760,028 downloaded_date 06/12/2022 release_date 07/09/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF238AYD.bed.gz processed_file_md5 3f84230895e0c966dfbfcc107943fc33 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF238AYD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF238AYD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF238AYD/@@download/ENCFF238AYD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF238AYD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 eb93a0979275a6a58eb41d3da24ac1d2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens type B pancreatic cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE175262;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-04-13,2020-07-06;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=type B pancreatic cell;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=pancreatic beta cell,insulin-secreting cell,B-cell of pancreatic islet,pancreatic B cell,pancreatic B-cell,beta cell of pancreatic islet,type B enteroendocrine cell,pancreatic islet core;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000169;is_hg38_lifted=no system_category Endocrine life_stage Embryonic track_name ENCODE type B pancreatic cell (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR458PYQ] [Life stage: Embryonic] [TF ChIP-seq peaks]
CTCF • WTC11 NGENCCWKMWQMYP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCCWKMWQMYP data_source ENCODE Download track Download number_of_intervals 24,309 bp_covered 10,482,554 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR992XTY biological_replicate 2 technical_replicate 2_1, 2_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 418,050 downloaded_date 06/12/2022 release_date 06/08/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF964PUY.bed.gz processed_file_md5 1dc48cae98c387fe3479eb71af885ea4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF964PUY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF964PUY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF964PUY/@@download/ENCFF964PUY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF964PUY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8ee81ccaec536fa4ddda79f03da531d9 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE209094;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-06-09,2022-06-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR992XTY] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • Fibroblast NGENCCX6FFKNV3 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Fibroblast TF Show metadata Download track Track metadata identifier NGENCCX6FFKNV3 data_source ENCODE Download track Download number_of_intervals 35,375 bp_covered 8,389,256 output_type IDR thresholded peaks genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Breast encode_experiment_id ENCSR000DUU biological_replicate 1 technical_replicate 1_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 635,856 downloaded_date 06/12/2022 release_date 09/25/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF275PHP.bed.gz processed_file_md5 c7119a51beee852a46d4aa8859a5e7b0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF275PHP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF275PHP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF275PHP/@@download/ENCFF275PHP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF275PHP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a60b2c93d84bfbf62617516e595679cc data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens fibroblast of mammary gland female;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DUU,UCSC-ENCODE-hg19:wgEncodeEH000985,GEO:GSM749675,SCREEN-GRCh38:fibroblast_of_mammary_gland_female;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2011-03-17,2011-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=fibroblast of mammary gland;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002555;is_hg38_lifted=no system_category Reproductive life_stage Unknown track_name ENCODE Fibroblast (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DUU] [TF ChIP-seq peaks]
CTCF • HCT116 NGENCCYMQCRK6W • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HCT116 TF Show metadata Download track Track metadata identifier NGENCCYMQCRK6W data_source ENCODE Download track Download number_of_intervals 83,279 bp_covered 42,827,234 output_type IDR thresholded peaks genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR048RGR biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 1,437,329 downloaded_date 07/10/2025 release_date 07/20/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF344UNN.bed.gz processed_file_md5 b7b1372985275fa54cd60ca0a2b9f6ae wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF344UNN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF344UNN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF344UNN/@@download/ENCFF344UNN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF344UNN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f047975177ad8234d8c8f05da863eb2f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens POLR2A treated with 1 _M 5-Phenyl-1H-indole-3-acetic acid for 6 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,Degron,RegulomeDB_2_1;Life_stage_age=adult 48 years;Reference=NR;External_resources=GEO:GSE230979;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-07-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=HCT116 cell,HCT-116 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name ENCODE HCT116 (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR048RGR] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • A549 NGENCCZENJTMU7 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENCCZENJTMU7 data_source ENCODE Download track Download number_of_intervals 40,781 bp_covered 14,525,483 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR249JOH biological_replicate 2 technical_replicate 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 767,613 downloaded_date 07/10/2025 release_date 10/02/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF755MFH.bed.gz processed_file_md5 bf1d0754ab2364be466f3f94dea6aee3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF755MFH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF755MFH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF755MFH/@@download/ENCFF755MFH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF755MFH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e75291590977a6259a51f230a1eb5a1a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=FactorBook:ENCSR249JOH,GEO:GSE92794;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-12-20;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR249JOH] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • IMR-90 NGENCCZGAPHNF5 • ENCODE22955616 | 41168159 | 31713622 ChIA-PET IMR-90 Chromatin interactions Show metadata Download track Track metadata identifier NGENCCZGAPHNF5 data_source ENCODE Download track Download number_of_intervals 525,903 bp_covered 186,816,788 output_type peaks genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR076TTY biological_replicate 2 technical_replicate 2_1 antibody CTCF assay ChIA-PET file_format bed narrowPeak file_size 12,890,559 downloaded_date 06/12/2022 release_date 10/08/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF988MRW.bed.gz processed_file_md5 31b84edca53afe2a34c8fd7127c47830 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF988MRW.bed.gz -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF988MRW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF988MRW/@@download/ENCFF988MRW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF988MRW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0539b8b5057e693b85014c37df3c7d80 data_category Chromatin interactions Genomic feature type ChIA-PET CTCF peaks track_description version=2024;Biosample_summary=Homo sapiens IMR-90;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=embryonic 16 weeks;Reference=PMID:28358394;External_resources=GEO:GSE176936;Project=ENCODE;Award=UM1HG009409;Experiment_date_released=2021-01-25;Submitted_track_name=LHI0004H.no_input_all_peaks.maxscore1000.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=IMR90;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Embryonic track_name ENCODE IMR-90 (repl. 2) ChIA-PET CTCF peaks (narrowPeak) [Experiment: ENCSR076TTY] [Life stage: Embryonic] [Chromatin interactions]
CTCF • HEK293T NGENCCZJA46T3T • ENCODE22955616 | 41168159 | 31713622 ChIA-PET HEK293T Chromatin interactions Show metadata Download track Track metadata identifier NGENCCZJA46T3T data_source ENCODE Download track Download number_of_intervals 34,492 bp_covered 25,195,847 output_type peaks genome_build hg38 cell_type HEK293T biosample_type Cell line biosample_term_id EFO:0001184 tissue_category Kidney encode_experiment_id ENCSR676KCF biological_replicate 1 technical_replicate 1_1 antibody CTCF assay ChIA-PET file_format bed broadPeak file_size 525,496 downloaded_date 06/12/2022 release_date 10/21/2020 date_added_to_filer 11/07/2022 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ENCFF067GTM.bed.gz processed_file_md5 4571f05d07f2613468a861f23a285360 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ENCFF067GTM.bed.gz -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ENCFF067GTM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF067GTM/@@download/ENCFF067GTM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF067GTM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e60553f0d62ff18ada5b5c28c97ff0be data_category Chromatin interactions Genomic feature type ChIA-PET CTCF peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293T;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=PMID:28358394;External_resources=GEO:GSE177741;Project=ENCODE;Award=UM1HG009409;Experiment_date_released=2021-01-25,2020-09-28;Submitted_track_name=LHH0084H.for.BROWSER.spp.z6.broadPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HEK293T;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+3;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001184;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293T (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR676KCF] [Life stage: Embryonic] [Chromatin interactions]
CTCF • MCF-7 NGENCCZL2DWZKX • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCCZL2DWZKX data_source ENCODE Download track Download number_of_intervals 55,732 bp_covered 17,546,534 output_type conservative IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR560BUE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 1,001,917 downloaded_date 06/12/2022 release_date 10/10/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF208OXF.bed.gz processed_file_md5 b9975fac30f081be51e957c841efefb5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF208OXF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF208OXF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF208OXF/@@download/ENCFF208OXF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF208OXF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ad60ec822e570cbd9aaeae83a05bddb7 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE123219,FactorBook:ENCSR560BUE;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-10-19,2015-08-03;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq CTCF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR560BUE] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • H1-hESC NGENCD22FX2SLZ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCD22FX2SLZ data_source ENCODE Download track Download number_of_intervals 45,570 bp_covered 8,964,864 output_type conservative IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BNH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 780,296 downloaded_date 06/12/2022 release_date 09/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF679ERG.bed.gz processed_file_md5 f3b7069485ba67f996b72cfb3bccec98 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF679ERG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF679ERG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF679ERG/@@download/ENCFF679ERG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF679ERG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 59bef605dda8e690fc7159152c5f5016 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM803419,UCSC-ENCODE-hg19:wgEncodeEH001649,FactorBook:ENCSR000BNH;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq CTCF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BNH] [Life stage: Embryonic] [TF ChIP-seq peaks]
CTCF • Endothelial cell NGENCD2MUAB3KO • ENCODE22955616 | 41168159 | 31713622 ChIA-PET Endothelial cell Chromatin interactions Show metadata Download track Track metadata identifier NGENCD2MUAB3KO data_source ENCODE Download track Download number_of_intervals 47,567 bp_covered 42,998,985 output_type peaks genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR404FPI biological_replicate 1 technical_replicate 1_1 antibody CTCF assay ChIA-PET file_format bed broadPeak file_size 764,764 downloaded_date 06/12/2022 release_date 03/23/2021 date_added_to_filer 11/07/2022 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ENCFF391OYY.bed.gz processed_file_md5 749fae7a665705e29ab23e30a14fbb99 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ENCFF391OYY.bed.gz -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ENCFF391OYY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF391OYY/@@download/ENCFF391OYY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF391OYY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c5bf98a7df5b27a53ad82dd12b743abc data_category Chromatin interactions Genomic feature type ChIA-PET CTCF peaks track_description version=2024;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Lab=Charles Lee;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE177081;Project=ENCODE;Award=3UM1HG009409-04S1;Experiment_date_released=2021-04-06,2020-09-28;Submitted_track_name=LHH0129V.for.BROWSER.spp.z6.broadPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=endothelial cell of umbilical vein;ENCODE_cell_slims=endothelial cell,epithelial cell;ENCODE_system_slims=reproductive system,circulatory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+3;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no system_category Embryo life_stage Newborn track_name ENCODE Endothelial cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR404FPI] [Life stage: Newborn] [Chromatin interactions]
CTCF • T47D NGENCD2PB7JGT6 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq T47D TF Show metadata Download track Track metadata identifier NGENCD2PB7JGT6 data_source ENCODE Download track Download number_of_intervals 28,736 bp_covered 5,633,217 output_type IDR thresholded peaks genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id ENCSR000BNO biological_replicate 2 technical_replicate 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 516,383 downloaded_date 07/10/2025 release_date 09/26/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF533NYM.bed.gz processed_file_md5 a85af1e3c715ba8099c01f26066fa3a2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF533NYM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF533NYM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF533NYM/@@download/ENCFF533NYM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF533NYM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a355dc34a68ddc02e51b1067fd76fab5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens T47D treated with 0.02% dimethyl sulfoxide for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 54 years;Reference=NR;External_resources=GEO:GSM803348,UCSC-ENCODE-hg19:wgEncodeEH001656,FactorBook:ENCSR000BNO;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=T47D;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE T47D (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BNO] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • A673 NGENCD37WJY2HW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A673 TF Show metadata Download track Track metadata identifier NGENCD37WJY2HW data_source ENCODE Download track Download number_of_intervals 61,054 bp_covered 23,069,601 output_type conservative IDR thresholded peaks genome_build hg38 cell_type A673 biosample_type Cell line biosample_term_id EFO:0002106 tissue_category Skeletal Muscle encode_experiment_id ENCSR611JJS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 1,082,131 downloaded_date 06/12/2022 release_date 10/10/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF123WOM.bed.gz processed_file_md5 0c7cba9e52364a035e5c14361c937740 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF123WOM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF123WOM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF123WOM/@@download/ENCFF123WOM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF123WOM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 153418bb9b6da9afaef0e54dfe73689b data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A673;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=NR;External_resources=FactorBook:ENCSR611JJS,SCREEN-GRCh38:A673,GEO:GSE123221;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-11-13,2016-05-06;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=A673;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002106;is_hg38_lifted=no system_category Muscular life_stage Child track_name ENCODE A673 (repl. 1, 2) TF ChIP-seq CTCF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR611JJS] [Life stage: Child] [TF ChIP-seq peaks]
CTCF • CD34+ NGENCD3YRXJ5KA • ENCODE22955616 | 41168159 | 31713622 ChIA-PET CD34+ Chromatin interactions Show metadata Download track Track metadata identifier NGENCD3YRXJ5KA data_source ENCODE Download track Download number_of_intervals 705,950 bp_covered 787,731,228 output_type chromatin interactions genome_build hg38 cell_type CD34+ biosample_type Primary cell biosample_term_id CL:0001059 tissue_category Blood encode_experiment_id ENCSR421NGZ biological_replicate 2 technical_replicate 2_1 antibody CTCF assay ChIA-PET file_format bed bed4+19 interact file_size 26,063,760 downloaded_date 09/20/2025 release_date 07/29/2021 date_added_to_filer 10/27/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF625NVO.bed.gz processed_file_md5 1661ef7d2659a105582d746c92aca0bc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF625NVO.bed.gz -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF625NVO.bed.gz.tbi -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ link_out_url https://www.encodeproject.org/ raw_file_url https://www.encodeproject.org/files/ENCFF625NVO/@@download/ENCFF625NVO.bedpe.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF625NVO.bedpe.gz -P FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ raw_file_md5 01fc291cd8e9884f45a7c774ac7ef35c data_category Chromatin interactions Genomic feature type ChIA-PET chromatin interactions track_description version=2024;Biosample_summary=Homo sapiens common myeloid progenitor, CD34-positive;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE187570;Project=ENCODE;Award=UM1HG009409;Experiment_date_released=2021-08-02;Submitted_track_name=LHHSC0002H.e500.clusters.cis.BE3.gz;ENCODE_preferred_default=false;ENCODE_biosample_term_name=common myeloid progenitor, CD34-positive;ENCODE_cell_slims=myeloid cell,progenitor cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=common myeloid precursor, CD34-positive;Analysis_title=Lab custom GRCh38;GM=NR;Fragmentation_method=sonication (Branson Sonifier 250);Library_size=350-600;schema=BED4+19;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0001059;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ENCODE CD34+ (repl. 2) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR421NGZ] [Chromatin interactions]
CTCF • Cardiac muscle cell NGENCD4E7GRO4V • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Cardiac muscle cell TF Show metadata Download track Track metadata identifier NGENCD4E7GRO4V data_source ENCODE Download track Download number_of_intervals 42,144 bp_covered 12,099,705 output_type IDR thresholded peaks genome_build hg38 cell_type Cardiac muscle cell biosample_type In vitro differentiated cells biosample_term_id CL:0000746 tissue_category Heart encode_experiment_id ENCSR713SXF biological_replicate 1 technical_replicate 1_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 717,060 downloaded_date 06/12/2022 release_date 10/10/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF777TNC.bed.gz processed_file_md5 e15dd47ed45c527b22d2ce75067ae69a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF777TNC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF777TNC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF777TNC/@@download/ENCFF777TNC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF777TNC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d279628044538423c8e33246620cde61 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens cardiac muscle cell originated from RUES2;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=NR;Reference=NR;External_resources=FactorBook:ENCSR713SXF,GEO:GSE123224;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-11-13,2016-11-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=cardiac muscle cell;ENCODE_cell_slims=cardiocyte;ENCODE_system_slims=musculature,circulatory system;ENCODE_biosample_term_synonyms=heart muscle cell,cardiac myocyte,cardiac muscle fiber,cardiomyocyte;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000746;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name ENCODE Cardiac muscle cell (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR713SXF] [Life stage: Embryonic] [TF ChIP-seq peaks]
CTCF • Gastrocnemius medialis NGENCDAO2WRLBC • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Gastrocnemius medialis TF Show metadata Download track Track metadata identifier NGENCDAO2WRLBC data_source ENCODE Download track Download number_of_intervals 32,974 bp_covered 12,056,789 output_type IDR thresholded peaks genome_build hg38 cell_type Gastrocnemius medialis biosample_type Tissue biosample_term_id UBERON:0011907 tissue_category Skeletal Muscle encode_experiment_id ENCSR594NSU biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 590,969 downloaded_date 06/12/2022 release_date 09/23/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF307PRR.bed.gz processed_file_md5 ed78c536f650740c2ed9c9d6755494eb wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF307PRR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF307PRR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF307PRR/@@download/ENCFF307PRR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF307PRR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3287e8cebb82d2eb090b5fa877e694a5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens gastrocnemius medialis tissue male adult (37 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx,RegulomeDB_2_1;Life_stage_age=adult 37 years;Reference=NR;External_resources=GEO:GSE143020,FactorBook:ENCSR594NSU;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-09-11,2016-10-24;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=gastrocnemius medialis;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=caput mediale musculus gastrocnemii,caput mediale (musculus gastrocnemius),medial head of gastrocnemius,medial head of gastrocnemius muscle;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0011907;is_hg38_lifted=no system_category Muscular life_stage Adult track_name ENCODE Gastrocnemius medialis (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR594NSU] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • Prostate gland NGENCDB2TPMH2A • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Prostate gland TF Show metadata Download track Track metadata identifier NGENCDB2TPMH2A data_source ENCODE Download track Download number_of_intervals 16,591 bp_covered 7,172,524 output_type IDR thresholded peaks genome_build hg38 cell_type Prostate gland biosample_type Tissue biosample_term_id UBERON:0002367 tissue_category Male Reproductive encode_experiment_id ENCSR230ORT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 280,197 downloaded_date 06/12/2022 release_date 09/24/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF462RCQ.bed.gz processed_file_md5 ceafe565438842f81bc38ecf675e85b7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF462RCQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF462RCQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF462RCQ/@@download/ENCFF462RCQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF462RCQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b5f03cd9a360ece4c55fd2307c3e9bef data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens prostate gland tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx,RegulomeDB_2_1;Life_stage_age=adult 54 years;Reference=NR;External_resources=GEO:GSE142934,FactorBook:ENCSR230ORT;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-09-11,2017-08-28;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=prostate gland;ENCODE_cell_slims=NR;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=male prostate,prostate;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002367;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE Prostate gland (repl. 1, 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR230ORT] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • Myoblast NGENCDBV74TE52 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Myoblast TF Show metadata Download track Track metadata identifier NGENCDBV74TE52 data_source ENCODE Download track Download number_of_intervals 47,386 bp_covered 11,197,279 output_type conservative IDR thresholded peaks genome_build hg38 cell_type Myoblast biosample_type Primary cell biosample_term_id CL:0000056 tissue_category Skeletal Muscle encode_experiment_id ENCSR000ANE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 820,070 downloaded_date 06/12/2022 release_date 09/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF303KWK.bed.gz processed_file_md5 70d33ba5f6e9b896986d414f1a3bbdce wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF303KWK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF303KWK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF303KWK/@@download/ENCFF303KWK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF303KWK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ff9bdd2193ab0890e085b11e5b29ff42 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens skeletal muscle myoblast male adult (22 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 22 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000110,FactorBook:ENCSR000ANE,GEO:GSM733762;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2011-02-10;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=skeletal muscle myoblast;ENCODE_cell_slims=myoblast,embryonic cell;ENCODE_system_slims=musculature;ENCODE_biosample_term_synonyms=skeletal myoblast;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000515;is_hg38_lifted=no system_category Muscular life_stage Adult track_name ENCODE Myoblast (repl. 1, 2) TF ChIP-seq CTCF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000ANE] [Life stage: Adult] [TF ChIP-seq peaks]