CUX1 • K562 NGFTBQT2GF7UY3 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBQT2GF7UY3 data_source Factorbook Download track Download number_of_intervals 1,471 bp_covered 23,536 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR178NTX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 23,695 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF136KLM_TGTCAGAGGCGTTTGA_sorted.bed.gz processed_file_md5 9d9773a363070e3e2cd4614040cef768 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF136KLM_TGTCAGAGGCGTTTGA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF136KLM_TGTCAGAGGCGTTTGA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF136KLM_TGTCAGAGGCGTTTGA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF136KLM_TGTCAGAGGCGTTTGA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 beb66c27e30b34de105dd8aca7e7cc10 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CUX1;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF136KLM;ENCODE_bigBed_id=ENCFF902MYN;PMID=34755879;Motif_sequence=TGTCAGAGGCGTTTGA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CUX1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR178NTX] [Life stage: Adult] [TFBS]
CUX1 • MCF-7 NGFTBQVBMOVQT6 • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBQVBMOVQT6 data_source Factorbook Download track Download number_of_intervals 905 bp_covered 13,575 output_type transcription factor binding sites significant genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR017CEO biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 7,583 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF184PHK_WTGATTGATWGATKR_filtered.bed.gz processed_file_md5 c617bbad51fc2081418d50b3f8a90614 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF184PHK_WTGATTGATWGATKR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF184PHK_WTGATTGATWGATKR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF184PHK_WTGATTGATWGATKR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF184PHK_WTGATTGATWGATKR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 9ba11d3e271c96a7fc3336fbc8cf1755 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF184PHK;ENCODE_bigBed_id=ENCFF779ATB;PMID=34755879;Motif_sequence=WTGATTGATWGATKR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 2, 3) Motif finding CUX1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR017CEO] [Life stage: Adult] [TFBS]
CUX1 • MCF-7 NGFTBULJXEIF23 • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBULJXEIF23 data_source Factorbook Download track Download number_of_intervals 8,220 bp_covered 65,760 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR017CEO biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 74,843 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF184PHK_TATTGATW_sorted.bed.gz processed_file_md5 8c47556c40ff4111012c91d28c39aa95 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF184PHK_TATTGATW_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF184PHK_TATTGATW_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF184PHK_TATTGATW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF184PHK_TATTGATW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4a6d728f79af5e761630437288496def data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF184PHK;ENCODE_bigBed_id=ENCFF779ATB;PMID=34755879;Motif_sequence=TATTGATW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 2, 3) Motif finding CUX1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR017CEO] [Life stage: Adult] [TFBS]
CUX1 • K562 NGFTBVJ7D4OSU7 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBVJ7D4OSU7 data_source Factorbook Download track Download number_of_intervals 1,850 bp_covered 20,350 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EFO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 28,664 downloaded_date 07/10/2024 release_date 08/20/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF838GFC_ATGACTCAGCA_sorted.bed.gz processed_file_md5 4370b170c1da8f975e7268f5d62c3311 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF838GFC_ATGACTCAGCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF838GFC_ATGACTCAGCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF838GFC_ATGACTCAGCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF838GFC_ATGACTCAGCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0b4e62dd049a7a936e55b1cbe1bd5d4f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF838GFC;ENCODE_bigBed_id=ENCFF057AIX;PMID=34755879;Motif_sequence=ATGACTCAGCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CUX1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EFO] [Life stage: Adult] [TFBS]
Reference annotation (CUX1) NGHOM2GSUZAJFL • HOMER20513432 Motif finding Reference annotation (CUX1) TFBS Show metadata Download track Track metadata identifier NGHOM2GSUZAJFL data_source HOMER Download track Download number_of_intervals 2,428,456 bp_covered 24,284,560 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody CUX1 assay Motif finding file_format bed bed6+5 Homer file_size 24,849,688 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/CUX1_Homeobox.hg38.processed.bed.gz processed_file_md5 c4b61c8aa28ecd03c40d1861118b144e wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/CUX1_Homeobox.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/CUX1_Homeobox.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=CUX1;DNA_binding_domain=Homeobox;Cell_type=K562;Assay=ChIP-Seq;Origin=GSE92882;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding CUX1 transcription factor binding sites (bed6+5 Homer) [TFBS]
Reference annotation (Cux2) NGHOMGDIWKLCYB • HOMER20513432 Motif finding Reference annotation (Cux2) TFBS Show metadata Download track Track metadata identifier NGHOMGDIWKLCYB data_source HOMER Download track Download number_of_intervals 1,124,810 bp_covered 11,248,100 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Cux2 assay Motif finding file_format bed bed6+5 Homer file_size 11,346,546 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Cux2_Homeobox.hg38.processed.bed.gz processed_file_md5 30f15343b622c7f22594d944683dd7f7 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Cux2_Homeobox.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Cux2_Homeobox.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=Cux2;DNA_binding_domain=Homeobox;Cell_type=Liver;Assay=ChIP-Seq;Origin=GSE35985;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding Cux2 transcription factor binding sites (bed6+5 Homer) [TFBS]
CXXC5 • K562 NGENCB3TT7XA2J • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCB3TT7XA2J data_source ENCODE Download track Download number_of_intervals 34,412 bp_covered 14,433,110 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR996SKD biological_replicate 3 technical_replicate 3_1 antibody CXXC5 assay TF ChIP-seq file_format bed narrowPeak file_size 667,376 downloaded_date 05/15/2024 release_date 06/11/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF488JJM.bed.gz processed_file_md5 31170b0dc1763335ec9dd203b1d71e41 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF488JJM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF488JJM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF488JJM/@@download/ENCFF488JJM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF488JJM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7d036eac54f947b76be39b7977167cb6 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CXXC5;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE209143;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-06-29,2020-08-03,2020-06-30;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 3) TF ChIP-seq CXXC5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR996SKD] [Life stage: Adult] [TF ChIP-seq peaks]
CXXC5 • K562 NGENCIEAQIVWDY • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCIEAQIVWDY data_source ENCODE Download track Download number_of_intervals 44,441 bp_covered 21,640,225 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR996SKD biological_replicate 3, 4 technical_replicate 3_1, 4_1 antibody CXXC5 assay TF ChIP-seq file_format bed narrowPeak file_size 870,368 downloaded_date 05/15/2024 release_date 06/11/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF497CZN.bed.gz processed_file_md5 8a3390807ac01b8fa456f2e880a3e56f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF497CZN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF497CZN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF497CZN/@@download/ENCFF497CZN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF497CZN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d0f8f198b91e4e42b500c8bccf13f499 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CXXC5;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE209143;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-06-29,2020-08-03,2020-06-30;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 3, 4) TF ChIP-seq CXXC5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR996SKD] [Life stage: Adult] [TF ChIP-seq peaks]
CXXC5 • K562 NGENCQ7ZBPDYXN • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCQ7ZBPDYXN data_source ENCODE Download track Download number_of_intervals 43,911 bp_covered 21,350,699 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR996SKD biological_replicate 3, 4 technical_replicate 3_1, 4_1 antibody CXXC5 assay TF ChIP-seq file_format bed narrowPeak file_size 861,367 downloaded_date 05/15/2024 release_date 06/11/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF756WYM.bed.gz processed_file_md5 04bd2ba8c7f50fa528175074c2ee42fc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF756WYM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF756WYM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF756WYM/@@download/ENCFF756WYM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF756WYM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 315da47b67c778d228ddb25015df3eba data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CXXC5;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE209143;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-06-29,2020-08-03,2020-06-30;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 3, 4) TF ChIP-seq CXXC5 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR996SKD] [Life stage: Adult] [TF ChIP-seq peaks]
CXXC5 • K562 NGENCTHQ3ECP2I • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCTHQ3ECP2I data_source ENCODE Download track Download number_of_intervals 33,784 bp_covered 14,067,086 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR996SKD biological_replicate 4 technical_replicate 4_1 antibody CXXC5 assay TF ChIP-seq file_format bed narrowPeak file_size 665,478 downloaded_date 05/15/2024 release_date 06/11/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF805OXN.bed.gz processed_file_md5 64167c83c498c1ffed4cf3beb5d91574 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF805OXN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF805OXN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF805OXN/@@download/ENCFF805OXN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF805OXN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7793e549256e035606fcb2d10c44b5f0 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CXXC5;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE209143;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-06-29,2020-08-03,2020-06-30;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 4) TF ChIP-seq CXXC5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR996SKD] [Life stage: Adult] [TF ChIP-seq peaks]
DACH1 • K562 NGENC4TLGJYHEW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC4TLGJYHEW data_source ENCODE Download track Download number_of_intervals 10,527 bp_covered 3,239,216 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR030TJP biological_replicate 2 technical_replicate 2_1 antibody DACH1 assay TF ChIP-seq file_format bed narrowPeak file_size 201,047 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF904JQK.bed.gz processed_file_md5 ed154b2974d5739a5cfb6532a6729a2d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF904JQK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF904JQK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF904JQK/@@download/ENCFF904JQK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF904JQK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7004529189795a2e96bb9998707397a3 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE127361,FactorBook:ENCSR030TJP;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2016-11-01;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq DACH1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR030TJP] [Life stage: Adult] [TF ChIP-seq peaks]
DACH1 • K562 NGENCBKLQEYOIP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCBKLQEYOIP data_source ENCODE Download track Download number_of_intervals 16,155 bp_covered 5,758,048 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR030TJP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DACH1 assay TF ChIP-seq file_format bed narrowPeak file_size 316,539 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF133HAH.bed.gz processed_file_md5 d6659d997eb41b12594b56375b8a3320 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF133HAH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF133HAH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF133HAH/@@download/ENCFF133HAH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF133HAH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 99ef3a4f5e4229c5a4c19600fc223b4c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE127361,FactorBook:ENCSR030TJP;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2016-11-01;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq DACH1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR030TJP] [Life stage: Adult] [TF ChIP-seq peaks]
DACH1 • K562 NGENCWWAXCBGTJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCWWAXCBGTJ data_source ENCODE Download track Download number_of_intervals 16,906 bp_covered 6,043,471 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR030TJP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DACH1 assay TF ChIP-seq file_format bed narrowPeak file_size 331,108 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF574LOW.bed.gz processed_file_md5 7b8b956e08b4e23202978399fa46496d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF574LOW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF574LOW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF574LOW/@@download/ENCFF574LOW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF574LOW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b002534fb5a641bbac6729a019d35fe3 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE127361,FactorBook:ENCSR030TJP;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2016-11-01;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq DACH1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR030TJP] [Life stage: Adult] [TF ChIP-seq peaks]
DACH1 • K562 NGENCY3OMGVJSD • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCY3OMGVJSD data_source ENCODE Download track Download number_of_intervals 9,816 bp_covered 3,446,835 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR030TJP biological_replicate 1 technical_replicate 1_1 antibody DACH1 assay TF ChIP-seq file_format bed narrowPeak file_size 187,106 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF715CGS.bed.gz processed_file_md5 4f711cc422b5f4b938e50ffe2cf4084b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF715CGS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF715CGS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF715CGS/@@download/ENCFF715CGS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF715CGS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c1275eb71cf5525e167bdb10ff427113 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE127361,FactorBook:ENCSR030TJP;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2016-11-01;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq DACH1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR030TJP] [Life stage: Adult] [TF ChIP-seq peaks]
DACH1 • K562 NGFTB46JADCGZF • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB46JADCGZF data_source Factorbook Download track Download number_of_intervals 22,412 bp_covered 336,180 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR030TJP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DACH1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 169,143 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF729DNM_WWGATWRATARATRR_filtered.bed.gz processed_file_md5 73ea84944d68c3b45f29ccead996ae3c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF729DNM_WWGATWRATARATRR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF729DNM_WWGATWRATARATRR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF729DNM_WWGATWRATARATRR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF729DNM_WWGATWRATARATRR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b00eebb3c1ceebdb6768639cb56122c8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF729DNM;ENCODE_bigBed_id=ENCFF574LOW;PMID=34755879;Motif_sequence=WWGATWRATARATRR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DACH1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR030TJP] [Life stage: Adult] [TFBS]
DACH1 • K562 NGFTB7QYXGBEHO • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB7QYXGBEHO data_source Factorbook Download track Download number_of_intervals 32,985 bp_covered 989,550 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR030TJP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DACH1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 422,549 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF729DNM_AGATAGATAGATAGATAGATAGATAGATAG_filtered.bed.gz processed_file_md5 fe9f7cfac79bcce6b62578da8fda49bf wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF729DNM_AGATAGATAGATAGATAGATAGATAGATAG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF729DNM_AGATAGATAGATAGATAGATAGATAGATAG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF729DNM_AGATAGATAGATAGATAGATAGATAGATAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF729DNM_AGATAGATAGATAGATAGATAGATAGATAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 827e56f284fce21c901f15ecf8e42369 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF729DNM;ENCODE_bigBed_id=ENCFF574LOW;PMID=34755879;Motif_sequence=AGATAGATAGATAGATAGATAGATAGATAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DACH1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR030TJP] [Life stage: Adult] [TFBS]
DACH1 • K562 NGFTBAL5BXDKYV • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBAL5BXDKYV data_source Factorbook Download track Download number_of_intervals 40,546 bp_covered 608,190 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR030TJP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DACH1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 428,390 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF729DNM_WWGATWRATARATRR_sorted.bed.gz processed_file_md5 c88d7781b6194966e3bc46e01cf07725 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF729DNM_WWGATWRATARATRR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF729DNM_WWGATWRATARATRR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF729DNM_WWGATWRATARATRR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF729DNM_WWGATWRATARATRR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b00eebb3c1ceebdb6768639cb56122c8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF729DNM;ENCODE_bigBed_id=ENCFF574LOW;PMID=34755879;Motif_sequence=WWGATWRATARATRR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DACH1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR030TJP] [Life stage: Adult] [TFBS]
DACH1 • K562 NGFTBBTJPC66NH • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBBTJPC66NH data_source Factorbook Download track Download number_of_intervals 44,967 bp_covered 719,472 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR030TJP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DACH1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 489,715 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF729DNM_ATCTATCTATCTATCT_sorted.bed.gz processed_file_md5 8f6454055c2ba26370c9e066434bf89d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF729DNM_ATCTATCTATCTATCT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF729DNM_ATCTATCTATCTATCT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF729DNM_ATCTATCTATCTATCT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF729DNM_ATCTATCTATCTATCT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a7f657109ea423bdb8f6f3944aeaf4eb data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF729DNM;ENCODE_bigBed_id=ENCFF574LOW;PMID=34755879;Motif_sequence=ATCTATCTATCTATCT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DACH1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR030TJP] [Life stage: Adult] [TFBS]
DACH1 • K562 NGFTBGCYDDYPNG • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBGCYDDYPNG data_source Factorbook Download track Download number_of_intervals 52,739 bp_covered 1,582,170 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR030TJP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DACH1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 743,825 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF729DNM_AGATAGATAGATAGATAGATAGATAGATAG_sorted.bed.gz processed_file_md5 ce2a8764a4d00f6f49f98c1431b2f661 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF729DNM_AGATAGATAGATAGATAGATAGATAGATAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF729DNM_AGATAGATAGATAGATAGATAGATAGATAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF729DNM_AGATAGATAGATAGATAGATAGATAGATAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF729DNM_AGATAGATAGATAGATAGATAGATAGATAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 827e56f284fce21c901f15ecf8e42369 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF729DNM;ENCODE_bigBed_id=ENCFF574LOW;PMID=34755879;Motif_sequence=AGATAGATAGATAGATAGATAGATAGATAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DACH1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR030TJP] [Life stage: Adult] [TFBS]
DACH1 • K562 NGFTBLWCQDAE4E • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBLWCQDAE4E data_source Factorbook Download track Download number_of_intervals 11,867 bp_covered 178,005 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR030TJP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DACH1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 194,814 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF729DNM_BVMHCAGCTGTTYBB_sorted.bed.gz processed_file_md5 7f82468613c880473185914ab77ff6a2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF729DNM_BVMHCAGCTGTTYBB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF729DNM_BVMHCAGCTGTTYBB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF729DNM_BVMHCAGCTGTTYBB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF729DNM_BVMHCAGCTGTTYBB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 86eb4304f4e40a283094a13ffb60a916 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF729DNM;ENCODE_bigBed_id=ENCFF574LOW;PMID=34755879;Motif_sequence=BVMHCAGCTGTTYBB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DACH1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR030TJP] [Life stage: Adult] [TFBS]