EP400 • K562 NGENCBVIFO7VVP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCBVIFO7VVP data_source ENCODE Download track Download number_of_intervals 34,365 bp_covered 23,332,101 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR817QKV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EP400 assay TF ChIP-seq file_format bed narrowPeak file_size 658,968 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF850OZQ.bed.gz processed_file_md5 8b304dd500412ebe5cb794be92d9298b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF850OZQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF850OZQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF850OZQ/@@download/ENCFF850OZQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF850OZQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1b71f6351271d2c978bbb1f3c193776e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE105856;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-06-29,2016-09-20;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq EP400 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR817QKV] [Life stage: Adult] [TF ChIP-seq peaks]
EP400 • K562 NGENCLJKDOZAJI • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCLJKDOZAJI data_source ENCODE Download track Download number_of_intervals 23,176 bp_covered 13,928,594 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR817QKV biological_replicate 1 technical_replicate 1_1 antibody EP400 assay TF ChIP-seq file_format bed narrowPeak file_size 423,907 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF913SAW.bed.gz processed_file_md5 666c357ace1f335f8a78ee1ff8c30b3d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF913SAW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF913SAW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF913SAW/@@download/ENCFF913SAW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF913SAW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 638b2f262473590c6b1a5bebe8867d4c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE105856;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-06-29,2016-09-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq EP400 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR817QKV] [Life stage: Adult] [TF ChIP-seq peaks]
EP400 • K562 NGENCVXG5N45YJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCVXG5N45YJ data_source ENCODE Download track Download number_of_intervals 32,922 bp_covered 22,355,689 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR817QKV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EP400 assay TF ChIP-seq file_format bed narrowPeak file_size 636,854 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF152IYH.bed.gz processed_file_md5 658a8cb733687ed8978f29129ff705b8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF152IYH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF152IYH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF152IYH/@@download/ENCFF152IYH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF152IYH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ad1b1e3d2045d51af19511b3fb85d60f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE105856;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-06-29,2016-09-20;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq EP400 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR817QKV] [Life stage: Adult] [TF ChIP-seq peaks]
EP400 • K562 NGENCYKOHRRTDI • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCYKOHRRTDI data_source ENCODE Download track Download number_of_intervals 30,090 bp_covered 18,807,155 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR817QKV biological_replicate 2 technical_replicate 2_1 antibody EP400 assay TF ChIP-seq file_format bed narrowPeak file_size 588,144 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF870PJM.bed.gz processed_file_md5 2c4545ff6012dcc7256c4294e4225439 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF870PJM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF870PJM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF870PJM/@@download/ENCFF870PJM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF870PJM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4a67409d7c38998d1b26fdea1adb8640 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE105856;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-06-29,2016-09-20;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq EP400 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR817QKV] [Life stage: Adult] [TF ChIP-seq peaks]
EP400 • K562 NGFTBP25KVCBCL • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBP25KVCBCL data_source Factorbook Download track Download number_of_intervals 6,408 bp_covered 70,488 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR817QKV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EP400 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 74,903 downloaded_date 07/10/2024 release_date 06/29/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF167CQF_TTGCATCASCY_sorted.bed.gz processed_file_md5 2a9b147d61e28a1427aaec37c3c4a0b4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF167CQF_TTGCATCASCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF167CQF_TTGCATCASCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF167CQF_TTGCATCASCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF167CQF_TTGCATCASCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 08377a2301b31a5da9b38bc4886d43a3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF167CQF;ENCODE_bigBed_id=ENCFF850OZQ;PMID=34755879;Motif_sequence=TTGCATCASCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding EP400 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR817QKV] [Life stage: Adult] [TFBS]
ER-alpha • MCF-7 NGFDGLG36DGRRL • 4DGenome25788621 ChIA-PET MCF-7 Chromatin interactions Show metadata Download track Track metadata identifier NGFDGLG36DGRRL data_source 4DGenome Download track Download number_of_intervals 130,538 bp_covered 581,563,866 output_type chromatin interactions genome_build hg38 cell_type MCF-7 biosample_type Immortalized cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody ER-alpha assay ChIA-PET file_format bed bed4+19 interact file_size 5,800,469 downloaded_date 06/10/2022 release_date 08/15/2014 date_added_to_filer 12/04/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/4DGenome/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ChIA-PET_MCF7_lifted.bed.gz processed_file_md5 a9df9c9ae6417353bf3d806a25598140 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/4DGenome/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ChIA-PET_MCF7_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/4DGenome/ChIA-PET/bed4plus19_interact/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/4DGenome/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ChIA-PET_MCF7_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/4DGenome/ChIA-PET/bed4plus19_interact/hg38/ link_out_url https://4dgenome.research.chop.edu/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/4DGenome/ChIA-PET_MCF7.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/4DGenome/ChIA-PET_MCF7.txt.lifted.bed raw_file_md5 f58aeb6f82a9d8880771d2814ff92230 data_category Chromatin interactions Genomic feature type ChIA-PET chromatin interactions track_description version=2015;Original_cell_type=MCF7;doi=https://doi.org/10.1093/bioinformatics/btv158;value_description=Fit Hi-C Confidence Score;pubmed_id=19890323, 22265404;schema=BED4+19;dataSource_pubmed_id=25788621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/4DGenome.html;original_biosample_term_id=Not available;is_hg38_lifted=yes system_category Reproductive life_stage Adult track_name 4DGenome MCF-7 ChIA-PET ER-alpha chromatin interactions (bed4+19 interact) [Life stage: Adult] [Chromatin interactions]
Reference annotation (ER71) NGHOM55DPRJUSS • HOMER20513432 Motif finding Reference annotation (ER71) TFBS Show metadata Download track Track metadata identifier NGHOM55DPRJUSS data_source HOMER Download track Download number_of_intervals 1,297,016 bp_covered 15,564,192 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody ER71 assay Motif finding file_format bed bed6+5 Homer file_size 14,040,212 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Etv2_ETS.hg38.processed.bed.gz processed_file_md5 3f7f7bbc682fa5f7c5dc0964f162afc6 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Etv2_ETS.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Etv2_ETS.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=Etv2;DNA_binding_domain=ETS;Cell_type=ES;Assay=ChIP-Seq;Origin=GSE59402;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding ER71 transcription factor binding sites (bed6+5 Homer) [TFBS]
Reference annotation (ERa) NGHOMWZVPRZGCL • HOMER20513432 Motif finding Reference annotation (ERa) TFBS Show metadata Download track Track metadata identifier NGHOMWZVPRZGCL data_source HOMER Download track Download number_of_intervals 340,549 bp_covered 5,108,235 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody ERa assay Motif finding file_format bed bed6+5 Homer file_size 4,434,615 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/ERE_NR_IR3.hg38.processed.bed.gz processed_file_md5 cfb8780e7bc5e6f61e820597ab040c97 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/ERE_NR_IR3.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/ERE_NR_IR3.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=ERE;DNA_binding_domain=NR,IR3;Cell_type=MCF7;Assay=ChIP-Seq;Origin=Unpublished;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding ERa transcription factor binding sites (bed6+5 Homer) [TFBS]
ERF • K562 NGENC233YB5CEC • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC233YB5CEC data_source ENCODE Download track Download number_of_intervals 4,407 bp_covered 1,296,021 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR459FUE biological_replicate 2 technical_replicate 2_1 antibody ERF assay TF ChIP-seq file_format bed narrowPeak file_size 82,297 downloaded_date 06/12/2022 release_date 07/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF526GOD.bed.gz processed_file_md5 a2aa9a8766dfd46ccb72c98c7a73da5e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF526GOD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF526GOD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF526GOD/@@download/ENCFF526GOD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF526GOD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1b8d45273f8019958e95abfbf71b655f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170114;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-03,2020-06-30,2022-01-20;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq ERF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR459FUE] [Life stage: Adult] [TF ChIP-seq peaks]
ERF • K562 NGENC7DZGUNOWC • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC7DZGUNOWC data_source ENCODE Download track Download number_of_intervals 451 bp_covered 223,734 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR225OGU biological_replicate 1 technical_replicate 1_1 antibody ERF assay TF ChIP-seq file_format bed narrowPeak file_size 9,449 downloaded_date 05/15/2024 release_date 08/19/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF688SQI.bed.gz processed_file_md5 7b842b0970a3c45be284511b135d1165 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF688SQI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF688SQI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF688SQI/@@download/ENCFF688SQI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF688SQI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ccadfff457611076b4f3d667a36f821e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE231259;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-23,2022-08-16;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq ERF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR225OGU] [Life stage: Adult] [TF ChIP-seq peaks]
ERF • K562 NGENCB7JQNZA5Y • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCB7JQNZA5Y data_source ENCODE Download track Download number_of_intervals 1,832 bp_covered 801,417 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR225OGU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ERF assay TF ChIP-seq file_format bed narrowPeak file_size 37,404 downloaded_date 05/15/2024 release_date 08/19/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF038GRE.bed.gz processed_file_md5 f1f17738b38b15bce8572a325ae8dd0c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF038GRE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF038GRE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF038GRE/@@download/ENCFF038GRE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF038GRE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3caa919fd1fb66c441d0e65cff6896c5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE231259;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-23,2022-08-16;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq ERF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR225OGU] [Life stage: Adult] [TF ChIP-seq peaks]
ERF • K562 NGENCCQWUATOEX • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCCQWUATOEX data_source ENCODE Download track Download number_of_intervals 1,299 bp_covered 520,383 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR225OGU biological_replicate 2 technical_replicate 2_1 antibody ERF assay TF ChIP-seq file_format bed narrowPeak file_size 26,136 downloaded_date 05/15/2024 release_date 08/19/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF504FYR.bed.gz processed_file_md5 6f28ad4ebbfaa84f7ca0a3e3f6b8e006 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF504FYR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF504FYR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF504FYR/@@download/ENCFF504FYR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF504FYR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b16228cc58bb24349ea372967dc6995f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE231259;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-23,2022-08-16;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq ERF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR225OGU] [Life stage: Adult] [TF ChIP-seq peaks]
ERF • HepG2 NGENCDDWR4E2DL • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCDDWR4E2DL data_source ENCODE Download track Download number_of_intervals 31,865 bp_covered 14,374,223 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR159DQO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ERF assay TF ChIP-seq file_format bed narrowPeak file_size 578,699 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF647PIT.bed.gz processed_file_md5 f17f70dd70deb2e40b07cf341bb36cd3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF647PIT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF647PIT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF647PIT/@@download/ENCFF647PIT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF647PIT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a734a12aef6ca1e9feca0e5d495f9526 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=GEO:GSE127445;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2018-02-12,2016-10-11;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ERF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR159DQO] [Life stage: Child] [TF ChIP-seq peaks]
ERF • HepG2 NGENCDNX7HACIP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCDNX7HACIP data_source ENCODE Download track Download number_of_intervals 22,734 bp_covered 10,229,608 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR159DQO biological_replicate 1 technical_replicate 1_1 antibody ERF assay TF ChIP-seq file_format bed narrowPeak file_size 400,876 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF992HGF.bed.gz processed_file_md5 a35c56c965d6918e1106882478cc81e1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF992HGF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF992HGF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF992HGF/@@download/ENCFF992HGF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF992HGF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 157ff321b43546d2e6572ddafae6df89 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=GEO:GSE127445;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2018-02-12,2016-10-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq ERF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR159DQO] [Life stage: Child] [TF ChIP-seq peaks]
ERF • HepG2 NGENCDTL7XG4AV • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCDTL7XG4AV data_source ENCODE Download track Download number_of_intervals 17,175 bp_covered 8,509,671 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR159DQO biological_replicate 2 technical_replicate 2_1 antibody ERF assay TF ChIP-seq file_format bed narrowPeak file_size 298,086 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF033ZWK.bed.gz processed_file_md5 93566ce3fedc96bc10f0c828ea9d0e16 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF033ZWK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF033ZWK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF033ZWK/@@download/ENCFF033ZWK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF033ZWK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7962520c5399b9d45b796c2e654e61a2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=GEO:GSE127445;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2018-02-12,2016-10-11;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq ERF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR159DQO] [Life stage: Child] [TF ChIP-seq peaks]
ERF • K562 NGENCFPB6HX3DA • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCFPB6HX3DA data_source ENCODE Download track Download number_of_intervals 2,511 bp_covered 1,100,177 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR225OGU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ERF assay TF ChIP-seq file_format bed narrowPeak file_size 50,681 downloaded_date 05/15/2024 release_date 08/19/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF218VPL.bed.gz processed_file_md5 5ec3ded44ea7f9cb7b520b25d5c73990 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF218VPL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF218VPL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF218VPL/@@download/ENCFF218VPL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF218VPL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3116381646050ea28733fd77fd34219c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE231259;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-23,2022-08-16;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq ERF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR225OGU] [Life stage: Adult] [TF ChIP-seq peaks]
ERF • K562 NGENCHQDHFZJNJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCHQDHFZJNJ data_source ENCODE Download track Download number_of_intervals 9,754 bp_covered 3,262,455 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR459FUE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ERF assay TF ChIP-seq file_format bed narrowPeak file_size 189,445 downloaded_date 06/12/2022 release_date 07/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF772WKB.bed.gz processed_file_md5 44c39b5afe049a8803b5d0ad075f44dd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF772WKB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF772WKB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF772WKB/@@download/ENCFF772WKB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF772WKB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 64408833a5f60284273453328b878b52 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170114;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-03,2020-06-30,2022-01-20;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq ERF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR459FUE] [Life stage: Adult] [TF ChIP-seq peaks]
ERF • K562 NGENCJBS5Y62YG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCJBS5Y62YG data_source ENCODE Download track Download number_of_intervals 3,858 bp_covered 1,187,467 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR459FUE biological_replicate 1 technical_replicate 1_1 antibody ERF assay TF ChIP-seq file_format bed narrowPeak file_size 71,060 downloaded_date 06/12/2022 release_date 07/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF190BDC.bed.gz processed_file_md5 46e8a60fdede9d8f6e77b6e4c3e80b1a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF190BDC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF190BDC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF190BDC/@@download/ENCFF190BDC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF190BDC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1bdb822152031c19b29b6140933685c7 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170114;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-03,2020-06-30,2022-01-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq ERF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR459FUE] [Life stage: Adult] [TF ChIP-seq peaks]
ERF • K562 NGENCU3RURRYMK • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCU3RURRYMK data_source ENCODE Download track Download number_of_intervals 10,000 bp_covered 3,344,983 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR459FUE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ERF assay TF ChIP-seq file_format bed narrowPeak file_size 194,139 downloaded_date 06/12/2022 release_date 07/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF626IQJ.bed.gz processed_file_md5 e0a40a7c8c238963a37387113e8745d2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF626IQJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF626IQJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF626IQJ/@@download/ENCFF626IQJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF626IQJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e3b3159eb2b7d0c09a81e87be0683f2a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170114;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-03,2020-06-30,2022-01-20;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq ERF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR459FUE] [Life stage: Adult] [TF ChIP-seq peaks]
ERF • HepG2 NGENCZ4HEX27E6 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCZ4HEX27E6 data_source ENCODE Download track Download number_of_intervals 29,705 bp_covered 13,229,448 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR159DQO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ERF assay TF ChIP-seq file_format bed narrowPeak file_size 540,265 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF516FUW.bed.gz processed_file_md5 3b6b7bb61fec147ed41d24434c0d9a57 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF516FUW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF516FUW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF516FUW/@@download/ENCFF516FUW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF516FUW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f3bc1797e9d57dd5ca745bd383713875 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=GEO:GSE127445;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2018-02-12,2016-10-11;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ERF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR159DQO] [Life stage: Child] [TF ChIP-seq peaks]