CTCF • Calu3 NGENCEOUJOXLJG • ENCODE22955616 | 41168159 | 31713622 ChIA-PET Calu3 Chromatin interactions Show metadata Download track Track metadata identifier NGENCEOUJOXLJG data_source ENCODE Download track Download number_of_intervals 513,828 bp_covered 208,785,040 output_type peaks genome_build hg38 cell_type Calu3 biosample_type Cell line biosample_term_id EFO:0002819 tissue_category Lung encode_experiment_id ENCSR723YJG biological_replicate 2 technical_replicate 2_1 antibody CTCF assay ChIA-PET file_format bed narrowPeak file_size 12,654,834 downloaded_date 05/15/2024 release_date 05/06/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF544TFP.bed.gz processed_file_md5 cdf629689e50c0f3d022fade4acd61d0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF544TFP.bed.gz -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF544TFP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF544TFP/@@download/ENCFF544TFP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF544TFP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e12b128aa813e8a1ea086509610c9425 data_category Chromatin interactions Genomic feature type ChIA-PET CTCF peaks track_description version=2024;Biosample_summary=Homo sapiens Calu3;Lab=Charles Lee;ENCODE_internal_tags=Deeply Profiled;Life_stage_age=adult 25 years;Reference=NR;External_resources=GEO:GSE242650;Project=ENCODE;Award=3UM1HG009409-04S1;Experiment_date_released=2022-06-27;Submitted_track_name=LHC0009.no_input_all_peaks.maxscore1000.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Calu3;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002819;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Respiratory life_stage Adult track_name ENCODE Calu3 (repl. 2) ChIA-PET CTCF peaks (narrowPeak) [Experiment: ENCSR723YJG] [Life stage: Adult] [Chromatin interactions]
CTCF • K562 NGENCEQ6KO64S4 • ENCODE22955616 | 41168159 | 31713622 ChIA-PET K562 Chromatin interactions Show metadata Download track Track metadata identifier NGENCEQ6KO64S4 data_source ENCODE Download track Download number_of_intervals 28,828 bp_covered 27,846,208 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR597AKG biological_replicate 2 technical_replicate 2_1 antibody CTCF assay ChIA-PET file_format bed broadPeak file_size 482,755 downloaded_date 06/12/2022 release_date 10/16/2020 date_added_to_filer 11/07/2022 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ENCFF429EAN.bed.gz processed_file_md5 7190f54fdfa37aabe5e90bb27aa38cd0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ENCFF429EAN.bed.gz -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ENCFF429EAN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF429EAN/@@download/ENCFF429EAN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF429EAN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 53fc9533f3b41643205bbb95648e2e82 data_category Chromatin interactions Genomic feature type ChIA-PET CTCF peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=PMID:28358394;External_resources=GEO:GSE177471;Project=ENCODE;Award=UM1HG009409;Experiment_date_released=2021-03-12,2020-09-28;Submitted_track_name=LHK0001N.for.BROWSER.spp.z6.broadPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+3;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR597AKG] [Life stage: Adult] [Chromatin interactions]
CTCF • Epithelial cell NGENCEQGAW42IJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Epithelial cell TF Show metadata Download track Track metadata identifier NGENCEQGAW42IJ data_source ENCODE Download track Download number_of_intervals 41,360 bp_covered 8,688,577 output_type IDR thresholded peaks genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Brain encode_experiment_id ENCSR000DTL biological_replicate 2 technical_replicate 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 709,472 downloaded_date 06/12/2022 release_date 09/25/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF683FIT.bed.gz processed_file_md5 ab2be6e5019eb486a8c792102e10992d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF683FIT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF683FIT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF683FIT/@@download/ENCFF683FIT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF683FIT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7146ff12bac5c08066d4290cf5acc0bd data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens choroid plexus epithelial cell;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000983,GEO:GSM749745,SCREEN-GRCh38:choroid_plexus_epithelial_cell,FactorBook:ENCSR000DTL;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2011-03-17;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=choroid plexus epithelial cell;ENCODE_cell_slims=neural cell,epithelial cell;ENCODE_system_slims=central nervous system,circulatory system;ENCODE_biosample_term_synonyms=epithelial cell of choroid plexus;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000706;is_hg38_lifted=no system_category Nervous life_stage Unknown track_name ENCODE Epithelial cell (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DTL] [TF ChIP-seq peaks]
CTCF • GM23338 NGENCEUC6E2D6N • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM23338 TF Show metadata Download track Track metadata identifier NGENCEUC6E2D6N data_source ENCODE Download track Download number_of_intervals 58,785 bp_covered 20,257,880 output_type IDR thresholded peaks genome_build hg38 cell_type GM23338 biosample_type Cell line biosample_term_id EFO:0007950 tissue_category iPSC encode_experiment_id ENCSR987GXT biological_replicate 2 technical_replicate 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 1,087,325 downloaded_date 06/12/2022 release_date 02/11/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF537SDU.bed.gz processed_file_md5 f0a73423294611477dd14129ca1d2fe6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF537SDU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF537SDU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF537SDU/@@download/ENCFF537SDU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF537SDU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 91ed3a86a872d4cbad64aca0c59450a3 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM23338 originated from GM23248;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,DREAM;Life_stage_age=adult 53 years;Reference=NR;External_resources=SCREEN-GRCh38:GM23338_male_adult_53_years_originated_from_fibroblast_of_arm,GEO:GSE123234,FactorBook:ENCSR987GXT;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-10-19,2016-05-03;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM23338;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0007950;is_hg38_lifted=no system_category Stem Cell life_stage Adult track_name ENCODE GM23338 (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR987GXT] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • Ovary NGENCEVMRUERKI • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Ovary TF Show metadata Download track Track metadata identifier NGENCEVMRUERKI data_source ENCODE Download track Download number_of_intervals 15,296 bp_covered 5,955,723 output_type IDR thresholded peaks genome_build hg38 cell_type Ovary biosample_type Tissue biosample_term_id NCIT:C12404 tissue_category Female Reproductive encode_experiment_id ENCSR934GQS biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 250,501 downloaded_date 06/12/2022 release_date 06/06/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF859AKQ.bed.gz processed_file_md5 5050a0a25b2ef2a0d655a6cec287e6f1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF859AKQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF859AKQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF859AKQ/@@download/ENCFF859AKQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF859AKQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e96578758857df792de512563f0ad892 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens ovary tissue female adult (41 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 41 years;Reference=NR;External_resources=GEO:GSE208914;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-06-09,2022-06-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=ovary;ENCODE_cell_slims=NR;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=gonad of female reproductive system,gonada of genitalia of female organism,female reproductive system gonada,gonada of female reproductive system,female organism genitalia gonad,gonad of genitalia of female organism,reproductive system of female organism gonada,gonad of female organism genitalia,gonad of reproductive system of female organism,female gonad,gonada of female organism reproductive system,female organism reproductive system gonada,gonada of female organism genitalia,female organism genitalia gonada,genitalia of female organism gonad,ovum-producing ovary,animal ovary,gonad of female organism reproductive system,reproductive system of female organism gonad,genitalia of female organism gonada,female organism reproductive system gonad,gonada of reproductive system of female organism,female reproductive system gonad;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000992;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE Ovary (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR934GQS] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • Pancreas NGENCEXLEDE47Y • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Pancreas TF Show metadata Download track Track metadata identifier NGENCEXLEDE47Y data_source ENCODE Download track Download number_of_intervals 22,481 bp_covered 8,515,315 output_type IDR thresholded peaks genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id ENCSR585KBH biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 366,789 downloaded_date 06/12/2022 release_date 09/23/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF021LNP.bed.gz processed_file_md5 ae609fdfcd190cc52350fe49078317f7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF021LNP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF021LNP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF021LNP/@@download/ENCFF021LNP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF021LNP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b616a76d9abe8c45ead85b2b84d5b94b data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens body of pancreas tissue female adult (51 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx,RegulomeDB_2_1;Life_stage_age=adult 51 years;Reference=NR;External_resources=GEO:GSE143016,FactorBook:ENCSR585KBH;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-09-11,2018-12-14;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=body of pancreas;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=pancreatic body,pancreas body;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001150;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name ENCODE Pancreas (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR585KBH] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • MCF-7 NGENCEZNAZM2BO • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCEZNAZM2BO data_source ENCODE Download track Download number_of_intervals 43,071 bp_covered 7,581,871 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DML biological_replicate 1 technical_replicate 1_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 751,045 downloaded_date 06/12/2022 release_date 09/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF876HUZ.bed.gz processed_file_md5 4cbfc0c07f38b5fe07f6237608792133 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF876HUZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF876HUZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF876HUZ/@@download/ENCFF876HUZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF876HUZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b668585f5275888cf7112486c36950a7 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Vishwanath Iyer, UTA;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DML,GEO:GSM1006878,UCSC-ENCODE-hg19:wgEncodeEH003437;Project=ENCODE;Award=U54HG004563;Experiment_date_released=2012-08-27,2011-03-17;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DML] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • type B pancreatic cell NGENCF3CXTP2MV • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq type B pancreatic cell TF Show metadata Download track Track metadata identifier NGENCF3CXTP2MV data_source ENCODE Download track Download number_of_intervals 78,290 bp_covered 35,050,375 output_type conservative IDR thresholded peaks genome_build hg38 cell_type type B pancreatic cell biosample_type In vitro differentiated cells biosample_term_id CL:0000169 tissue_category Pancreas encode_experiment_id ENCSR458PYQ biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 1,466,044 downloaded_date 06/12/2022 release_date 07/09/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF910FNQ.bed.gz processed_file_md5 72d71b9b0e69b5dade475c2763a027fe wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF910FNQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF910FNQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF910FNQ/@@download/ENCFF910FNQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF910FNQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3791844895100ebef864e7cd511beeb1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens type B pancreatic cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE175262;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-04-13,2020-07-06;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=type B pancreatic cell;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=pancreatic beta cell,insulin-secreting cell,B-cell of pancreatic islet,pancreatic B cell,pancreatic B-cell,beta cell of pancreatic islet,type B enteroendocrine cell,pancreatic islet core;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000169;is_hg38_lifted=no system_category Endocrine life_stage Embryonic track_name ENCODE type B pancreatic cell (repl. 1, 2) TF ChIP-seq CTCF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR458PYQ] [Life stage: Embryonic] [TF ChIP-seq peaks]
CTCF • MCF-7 NGENCF6MDPASH4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCF6MDPASH4 data_source ENCODE Download track Download number_of_intervals 51,139 bp_covered 8,599,148 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DMO biological_replicate 2 technical_replicate 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 838,757 downloaded_date 06/12/2022 release_date 09/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF748CTL.bed.gz processed_file_md5 f90dfd0d74aeddf8dd7891d69ec0ad56 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF748CTL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF748CTL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF748CTL/@@download/ENCFF748CTL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF748CTL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 513c4a8af944188ef43ed6a0948f8892 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Vishwanath Iyer, UTA;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DMO,GEO:GSM1006875,UCSC-ENCODE-hg19:wgEncodeEH003434,SCREEN-GRCh38:MCF-7_treated_with_serum_stimulated_media;Project=ENCODE;Award=U54HG004563;Experiment_date_released=2012-08-27,2011-03-17;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DMO] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • Endothelial cell NGENCF6QPONWUG • ENCODE22955616 | 41168159 | 31713622 ChIA-PET Endothelial cell Chromatin interactions Show metadata Download track Track metadata identifier NGENCF6QPONWUG data_source ENCODE Download track Download number_of_intervals 911,030 bp_covered 1,154,896,492 output_type chromatin interactions genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR404FPI biological_replicate 1 technical_replicate 1_1 antibody CTCF assay ChIA-PET file_format bed bed4+19 interact file_size 34,507,461 downloaded_date 09/20/2025 release_date 03/22/2021 date_added_to_filer 10/27/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF975WWK.bed.gz processed_file_md5 471461c53f048102dcf7c084056e4880 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF975WWK.bed.gz -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF975WWK.bed.gz.tbi -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ link_out_url https://www.encodeproject.org/ raw_file_url https://www.encodeproject.org/files/ENCFF975WWK/@@download/ENCFF975WWK.bedpe.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF975WWK.bedpe.gz -P FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ raw_file_md5 3bd509dbe2a72abe6b7283ace0839a61 data_category Chromatin interactions Genomic feature type ChIA-PET chromatin interactions track_description version=2024;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Lab=Charles Lee;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE177081;Project=ENCODE;Award=3UM1HG009409-04S1;Experiment_date_released=2021-04-06,2020-09-28;Submitted_track_name=LHH0129V.e500.clusters.cis.BE3.gz;ENCODE_preferred_default=false;ENCODE_biosample_term_name=endothelial cell of umbilical vein;ENCODE_cell_slims=endothelial cell,epithelial cell;ENCODE_system_slims=circulatory system,reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=Lab custom GRCh38;GM=NR;Fragmentation_method=sonication (Branson Sonifier 250);Library_size=350-600, 300-600;schema=BED4+19;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no system_category Embryo life_stage Newborn track_name ENCODE Endothelial cell (repl. 1) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR404FPI] [Life stage: Newborn] [Chromatin interactions]
CTCF • Testis NGENCF76KVZTBP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Testis TF Show metadata Download track Track metadata identifier NGENCF76KVZTBP data_source ENCODE Download track Download number_of_intervals 36,054 bp_covered 14,396,518 output_type IDR thresholded peaks genome_build hg38 cell_type Testis biosample_type Tissue biosample_term_id UBERON:0000473 tissue_category Male Reproductive encode_experiment_id ENCSR753RME biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 630,014 downloaded_date 06/12/2022 release_date 09/23/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF919VBQ.bed.gz processed_file_md5 aa914631256235e10de773c79c705fa6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF919VBQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF919VBQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF919VBQ/@@download/ENCFF919VBQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF919VBQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 23dc280a0e3244da1639f0ab330643bc data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens testis tissue male adult (37 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx,RegulomeDB_2_1;Life_stage_age=adult 37 years;Reference=NR;External_resources=GEO:GSE143075,FactorBook:ENCSR753RME;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-09-11,2017-08-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=testis;ENCODE_cell_slims=NR;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=gonad of male reproductive system,male gonad,gonad of male genitalia,testicle;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0000473;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE Testis (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR753RME] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • A549 NGENCFAAKOYVMO • ENCODE22955616 | 41168159 | 31713622 ChIA-PET A549 Chromatin interactions Show metadata Download track Track metadata identifier NGENCFAAKOYVMO data_source ENCODE Download track Download number_of_intervals 18,082 bp_covered 11,932,192 output_type peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR911ZMB biological_replicate 1 technical_replicate 1_1 antibody CTCF assay ChIA-PET file_format bed broadPeak file_size 280,574 downloaded_date 06/12/2022 release_date 10/21/2020 date_added_to_filer 11/07/2022 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ENCFF952XNC.bed.gz processed_file_md5 5034a73c781a6f69b4a3b74a7686b86c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ENCFF952XNC.bed.gz -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ENCFF952XNC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/broadPeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF952XNC/@@download/ENCFF952XNC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF952XNC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 32a26d992b5ac8f30dd0b4eccd244605 data_category Chromatin interactions Genomic feature type ChIA-PET CTCF peaks track_description version=2024;Biosample_summary=Homo sapiens A549;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=PMID:28358394;External_resources=GEO:GSE177818;Project=ENCODE;Award=UM1HG009409;Experiment_date_released=2021-01-25,2020-09-28;Submitted_track_name=LHA0005H.for.BROWSER.spp.z6.broadPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+3;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR911ZMB] [Life stage: Adult] [Chromatin interactions]
CTCF • RWPE1 NGENCFC3BDXVBF • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq RWPE1 TF Show metadata Download track Track metadata identifier NGENCFC3BDXVBF data_source ENCODE Download track Download number_of_intervals 52,022 bp_covered 29,188,813 output_type IDR thresholded peaks genome_build hg38 cell_type RWPE1 biosample_type Cell line biosample_term_id EFO:0002323 tissue_category Male Reproductive encode_experiment_id ENCSR303GFI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 889,380 downloaded_date 06/12/2022 release_date 09/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF185APH.bed.gz processed_file_md5 039ef291c7e4037273e3a77f968fa77d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF185APH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF185APH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF185APH/@@download/ENCFF185APH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF185APH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2c75ef8121c675922f0784aea427343a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens RWPE1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2;Life_stage_age=adult 54 years;Reference=NR;External_resources=GEO:GSE105468,SCREEN-GRCh38:RWPE1,FactorBook:ENCSR303GFI;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-07-21,2017-01-31;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=RWPE1;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=RWPE 1,RWPE_1,CRL-11609;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002323;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE RWPE1 (repl. 1, 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR303GFI] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • Excitatory neurons NGENCFCSI4AR2M • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Excitatory neurons TF Show metadata Download track Track metadata identifier NGENCFCSI4AR2M data_source ENCODE Download track Download number_of_intervals 54,828 bp_covered 29,696,345 output_type IDR thresholded peaks genome_build hg38 cell_type Excitatory neurons biosample_type In vitro differentiated cells biosample_term_id CL:0008030 tissue_category Brain encode_experiment_id ENCSR489QDF biological_replicate 1 technical_replicate 1_1, 1_2, 1_3, 1_4 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 974,987 downloaded_date 06/12/2022 release_date 07/09/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF816BTR.bed.gz processed_file_md5 d9b1a67d5bfa99ad2a579fc6c7857525 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF816BTR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF816BTR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF816BTR/@@download/ENCFF816BTR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF816BTR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a76031a81488815b9518125aa6c7fbc1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens glutamatergic neuron;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE175299;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-04-13,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=glutamatergic neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0008030;is_hg38_lifted=no system_category Nervous life_stage Adult track_name ENCODE Excitatory neurons (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR489QDF] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • Lung NGENCFE3K455ZH • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Lung TF Show metadata Download track Track metadata identifier NGENCFE3K455ZH data_source ENCODE Download track Download number_of_intervals 37,691 bp_covered 13,965,789 output_type IDR thresholded peaks genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id ENCSR195POA biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 676,913 downloaded_date 06/12/2022 release_date 07/09/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF906NCV.bed.gz processed_file_md5 53292655989a236003a103f30bf0ce46 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF906NCV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF906NCV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF906NCV/@@download/ENCFF906NCV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF906NCV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f34b374550d6b5aee4b1c0680213aada data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens lower lobe of left lung tissue male adult (60 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 60 years;Reference=NR;External_resources=GEO:GSE175076;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-04-13,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=lower lobe of left lung;ENCODE_cell_slims=NR;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=left lower lobe,lobus inferior (pulmo sinister),inferior lobe of left lung,left lung caudal lobe,lobus inferior pulmonis sinistri,left lower lobe of lung;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0008953;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE Lung (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR195POA] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • DOHH2 NGENCFESV6DBKN • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq DOHH2 TF Show metadata Download track Track metadata identifier NGENCFESV6DBKN data_source ENCODE Download track Download number_of_intervals 46,832 bp_covered 18,714,246 output_type IDR thresholded peaks genome_build hg38 cell_type DOHH2 biosample_type Cell line biosample_term_id EFO:0002167 tissue_category Blood encode_experiment_id ENCSR084RDK biological_replicate 1 technical_replicate 1_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 824,509 downloaded_date 06/12/2022 release_date 10/10/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF236WSB.bed.gz processed_file_md5 533a48609f677ad0404323b69fad7e24 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF236WSB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF236WSB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF236WSB/@@download/ENCFF236WSB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF236WSB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 92284bcc17b7b61d7c9b4b62da2c2be2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens DOHH2;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 60 years;Reference=NR;External_resources=FactorBook:ENCSR084RDK,SCREEN-GRCh38:DOHH2,GEO:GSE101017;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=DOHH2;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002167;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE DOHH2 (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR084RDK] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • HCT116 NGENCFFISRNHUQ • ENCODE22955616 | 41168159 | 31713622 ChIA-PET HCT116 Chromatin interactions Show metadata Download track Track metadata identifier NGENCFFISRNHUQ data_source ENCODE Download track Download number_of_intervals 788,352 bp_covered 623,835,992 output_type chromatin interactions genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR106EOT biological_replicate 2 technical_replicate 2_1 antibody CTCF assay ChIA-PET file_format bed bed4+19 interact file_size 29,362,440 downloaded_date 09/20/2025 release_date 03/07/2022 date_added_to_filer 10/27/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF370OPC.bed.gz processed_file_md5 c5a63392ca4aff79c240fe450509316d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF370OPC.bed.gz -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF370OPC.bed.gz.tbi -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ link_out_url https://www.encodeproject.org/ raw_file_url https://www.encodeproject.org/files/ENCFF370OPC/@@download/ENCFF370OPC.bedpe.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF370OPC.bedpe.gz -P FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ raw_file_md5 adac417f63c6fc5054194fe8b336c72a data_category Chromatin interactions Genomic feature type ChIA-PET chromatin interactions track_description version=2024;Biosample_summary=Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CTCF;Lab=Charles Lee;ENCODE_internal_tags=Degron;Life_stage_age=adult 48 years;Reference=NR;External_resources=GEO:GSE242620;Project=ENCODE;Award=3UM1HG009409-04S1;Experiment_date_released=2022-03-14;Submitted_track_name=LHH0236.e500.clusters.cis.BE3.gz;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=HCT-116 cell,HCT116 cell;Analysis_title=Lab custom GRCh38;GM=[Method:CRISPR|Category:Insertion];Fragmentation_method=sonication (Branson Sonifier 250);Library_size=300-600;schema=BED4+19;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name ENCODE HCT116 (repl. 2) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR106EOT] [Life stage: Adult] [Chromatin interactions]
CTCF • Peyers patch NGENCFGAE5PNMJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Peyers patch TF Show metadata Download track Track metadata identifier NGENCFGAE5PNMJ data_source ENCODE Download track Download number_of_intervals 42,261 bp_covered 12,396,676 output_type IDR thresholded peaks genome_build hg38 cell_type Peyers patch biosample_type Tissue biosample_term_id UBERON:0001211 tissue_category Immune encode_experiment_id ENCSR419ANE biological_replicate 1 technical_replicate 1_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 761,039 downloaded_date 06/12/2022 release_date 08/13/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF701KWW.bed.gz processed_file_md5 563bc462cc01a9f5514a7a2e8b57656d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF701KWW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF701KWW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF701KWW/@@download/ENCFF701KWW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF701KWW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 bcf64968fe747be79247022e4827140f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens Peyer's patch tissue male adult (37 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=ccre_inputv2,ENTEx,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 37 years;Reference=NR;External_resources=FactorBook:ENCSR419ANE,GEO:GSE105510,SCREEN-GRCh38:Peyers_patch_female_adult_53_years;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-01-30;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=Peyer's patch;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system,immune system;ENCODE_biosample_term_synonyms=noduli lymphoidei aggregati;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001211;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name ENCODE Peyers patch (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR419ANE] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • Astrocyte NGENCFGIDCVAND • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Astrocyte TF Show metadata Download track Track metadata identifier NGENCFGIDCVAND data_source ENCODE Download track Download number_of_intervals 39,437 bp_covered 8,458,235 output_type IDR thresholded peaks genome_build hg38 cell_type Astrocyte biosample_type Primary cell biosample_term_id CL:0000127 tissue_category Nervous encode_experiment_id ENCSR000DSU biological_replicate 1 technical_replicate 1_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 676,121 downloaded_date 06/12/2022 release_date 09/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF309ISW.bed.gz processed_file_md5 79d8506456e0d6801e9906ec3e7bfdd2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF309ISW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF309ISW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF309ISW/@@download/ENCFF309ISW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF309ISW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0479333215a0ec4fb9e1a4b3099af357 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens astrocyte of the spinal cord;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000989,FactorBook:ENCSR000DSU,GEO:GSM749696,SCREEN-GRCh38:astrocyte_of_the_spinal_cord;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2012-01-17,2011-03-17;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=astrocyte of the spinal cord;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0002606;is_hg38_lifted=no system_category Nervous life_stage Unknown track_name ENCODE Astrocyte (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DSU] [TF ChIP-seq peaks]
CTCF • A549 NGENCFH2IO7N2O • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENCFH2IO7N2O data_source ENCODE Download track Download number_of_intervals 45,067 bp_covered 14,184,358 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR876UZD biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 790,437 downloaded_date 09/10/2024 release_date 10/01/2020 date_added_to_filer 10/01/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF904XCT.bed.gz processed_file_md5 e052453ba8a848373814428f207cefd6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF904XCT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF904XCT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF904XCT/@@download/ENCFF904XCT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF904XCT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 78a14ec090d56d84eb711f016446ee47 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 5 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE92832,FactorBook:ENCSR876UZD;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-12-20;Submitted_track_name=rep2_vs_rep3.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 2, 3) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR876UZD] [Life stage: Adult] [TF ChIP-seq peaks]