H3K23me2 • H1-hESC NGRMPMKULR3S7H • ROADMAP [lifted]25693563 ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGRMPMKULR3S7H data_source ROADMAP-lifted Download track Download number_of_intervals 52,495 bp_covered 9,929,973 output_type peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K23me2 assay ChIP-seq file_format bed narrowPeak-lifted file_size 1,477,845 downloaded_date 08/15/2018 release_date 11/30/2014 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/UCSD.H1.H3K23me2.YL198.narrowPeak.lifted.bed.gz processed_file_md5 0d6e645da4a2be83b10c234d8fcfb3ec wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/UCSD.H1.H3K23me2.YL198.narrowPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/UCSD.H1.H3K23me2.YL198.narrowPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/narrowPeak/UCSD.H1.H3K23me2.YL198.narrowPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/narrowpeak/UCSD.H1.H3K23me2.YL198.narrowPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/narrowpeak/ raw_file_md5 d3922682bb365c73f1264d8b092ac596 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K23me2 peaks track_description version=2015;Original_cell_type=H1;Donor=YL198;schema=BED3+10;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP-lifted H1-hESC ChIP-seq H3K23me2-histone-mark peaks (narrowPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K23me2 • H9 NGRMPSUXMBJ7MM • ROADMAP [lifted]25693563 ChIP-seq H9 Histone Show metadata Download track Track metadata identifier NGRMPSUXMBJ7MM data_source ROADMAP-lifted Download track Download number_of_intervals 36,479 bp_covered 20,365,377 output_type peaks genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K23me2 assay ChIP-seq file_format bed gappedPeak-lifted file_size 1,647,976 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/28/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H9.H3K23me2.SK277.gappedPeak.lifted.bed.gz processed_file_md5 ac57f9cca9ce9e010df665576c7936e8 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H9.H3K23me2.SK277.gappedPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/UCSD.H9.H3K23me2.SK277.gappedPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/gappedPeak/UCSD.H9.H3K23me2.SK277.gappedPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/gappedpeak/UCSD.H9.H3K23me2.SK277.gappedPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/gappedpeak/ raw_file_md5 f7d60dc22b7f23e1181db0716052bc79 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K23me2 peaks track_description version=2015;Original_cell_type=H9;Donor=SK277;schema=BED3+15;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP-lifted H9 ChIP-seq H3K23me2-histone-mark peaks (gappedPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K23me2 • H1-hESC NGRMPVXUV3RWGZ • ROADMAP [lifted]25693563 ChIP-seq H1-hESC Histone Show metadata Download track Track metadata identifier NGRMPVXUV3RWGZ data_source ROADMAP-lifted Download track Download number_of_intervals 1,196,289 bp_covered 921,655,015 output_type peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K23me2 assay ChIP-seq file_format bed broadPeak-lifted file_size 38,431,386 downloaded_date 08/15/2018 release_date 02/08/2015 date_added_to_filer 03/27/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1.H3K23me2.YL198.broadPeak.lifted.bed.gz processed_file_md5 b1342aac0c6e0c1d8593e8fa5ded1064 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1.H3K23me2.YL198.broadPeak.lifted.bed.gz -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/UCSD.H1.H3K23me2.YL198.broadPeak.lifted.bed.gz.tbi -P GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/broadpeak/hg38/2/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/peaks/unconsolidated/broadPeak/UCSD.H1.H3K23me2.YL198.broadPeak.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/broadpeak/UCSD.H1.H3K23me2.YL198.broadPeak.gz -P GADB/Annotationtracks/Downloads/ROADMAP/broadpeak/ raw_file_md5 21f58c3eaecbdc6f1d2a1ef837881d94 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K23me2 peaks track_description version=2015;Original_cell_type=H1;Donor=YL198;schema=BED3+9;dataSource_pubmed_id=25693563;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=yes system_category Embryo life_stage Embryonic track_name ROADMAP-lifted H1-hESC ChIP-seq H3K23me2-histone-mark peaks (broadPeak-lifted) [Life stage: Embryonic] [Histone ChIP-seq peaks]
H3K27ac • PU.1+ Microglia NGBEPEL3MFQLKAT3 • Nott 201931727856 Enhancer PU.1+ Microglia Enhancer Show metadata Download track Track metadata identifier NGBEPEL3MFQLKAT3 data_source Nott_2019 Download track Download number_of_intervals 44,092 bp_covered 59,339,374 output_type enhancer peaks genome_build hg38 cell_type PU.1+ Microglia biosample_type Tissue biosample_term_id CL:0000129 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Enhancer file_format bed bed3-lifted file_size 734,814 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_Microglia_enhancers_lifted.bed.gz processed_file_md5 bcca034e2608b698ab6e3ecb4f9da3d3 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_Microglia_enhancers_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_Microglia_enhancers_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/enhancers/PU1_enhancers.sorted.bigBed -P FILER2/Annotationtracks/Downloads/Nott_2019/enhancers/PU1_enhancers.sorted.bigBed raw_file_md5 dc5e9fce9cb59fbc99df84908a6e7092 data_category Enhancer Genomic feature type H3K27ac enhancer peaks track_description version=2019;Original_cell_type=microglia;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 4yo, 18yo;sexes=M;ethnicities=His, Caucasian;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Residual ateriovenous malformation, Negative pathology, Focal cortical dysplasia type Ic;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED3 system_category Nervous life_stage Adult, Child track_name Nott_2019 PU.1+ Microglia Enhancer H3K27ac-histone-mark enhancer peaks (bed3-lifted) [Life stage: Adult, Child] [Enhancer]
H3K27ac • Neuron NGBEPEL4GLYM5OX3 • Nott 201931727856 Enhancer Neuron Enhancer Show metadata Download track Track metadata identifier NGBEPEL4GLYM5OX3 data_source Nott_2019 Download track Download number_of_intervals 141,642 bp_covered 130,290,144 output_type enhancer peaks genome_build hg38 cell_type Neuron biosample_type Tissue biosample_term_id CL:0000540 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Enhancer file_format bed bed3-lifted file_size 2,302,799 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_NeuN_enhancers_lifted.bed.gz processed_file_md5 9adca47b36ff7da3bfb0a78ad4d80e16 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_NeuN_enhancers_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_NeuN_enhancers_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/enhancers/NeuN_enhancers.sorted.bigBed -P FILER2/Annotationtracks/Downloads/Nott_2019/enhancers/NeuN_enhancers.sorted.bigBed raw_file_md5 220511817dcfb6f010e3bfd50875a22b data_category Enhancer Genomic feature type H3K27ac enhancer peaks track_description version=2019;Original_cell_type=neurons;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 4yo, 18yo;sexes=M;ethnicities=His, Caucasian;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Residual ateriovenous malformation, Negative pathology, Focal cortical dysplasia type Ic;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED3 system_category Nervous life_stage Adult, Child track_name Nott_2019 Neuron Enhancer H3K27ac-histone-mark enhancer peaks (bed3-lifted) [Life stage: Adult, Child] [Enhancer]
H3K27ac • Neuron NGBEPELCBNAG2EFC • Nott 201931727856 Super-enhancer Neuron Enhancer Show metadata Download track Track metadata identifier NGBEPELCBNAG2EFC data_source Nott_2019 Download track Download number_of_intervals 1,170 bp_covered 98,328,897 output_type super-enhancer peaks genome_build hg38 cell_type Neuron biosample_type Tissue biosample_term_id CL:0000540 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Super-enhancer file_format bed bed6-lifted file_size 29,680 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_NEUN_superEnhancer_L1_lifted.bed.gz processed_file_md5 7e0e8eb72bfe649022b85c472cf0ff4f wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_NEUN_superEnhancer_L1_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_NEUN_superEnhancer_L1_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/Super_enhancers/NEUN_superEnhancer_L1.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/Super_enhancers/NEUN_superEnhancer_L1.gz raw_file_md5 c9e8e569c8137b41a055488b927275ea data_category Enhancer Genomic feature type H3K27ac super-enhancer peaks track_description version=2019;Original_cell_type=neurons;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 4yo, 18yo;sexes=M;ethnicities=His, Caucasian;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Residual ateriovenous malformation, Negative pathology, Focal cortical dysplasia type Ic;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED6 system_category Nervous life_stage Adult, Child track_name Nott_2019 Neuron Super-enhancer H3K27ac-histone-mark super-enhancer peaks (bed6-lifted) [Life stage: Adult, Child] [Enhancer]
H3K27ac • PU.1+ Microglia NGBEPELCYWMCR5BJ • Nott 201931727856 Histone ChIP-seq PU.1+ Microglia Histone Show metadata Download track Track metadata identifier NGBEPELCYWMCR5BJ data_source Nott_2019 Download track Download number_of_intervals 48,791 bp_covered 82,267,056 output_type peaks genome_build hg38 cell_type PU.1+ Microglia biosample_type Tissue biosample_term_id CL:0000129 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Histone ChIP-seq file_format bed bed3-lifted file_size 822,603 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz processed_file_md5 dcbea562195c6dc5e6592df34e88227e wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/H3K27/PU1_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/H3K27/PU1_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz raw_file_md5 2eb92bd0cca0d176b2059df8a9847683 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac peaks track_description version=2019;Original_cell_type=PU1_optimal_peak_IDR_ENCODE.H3K27;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=14yo, 18yo, 4yo;sexes=M;ethnicities=Caucasian, His;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Focal cortical dysplasia type Ic, Negative pathology, Residual ateriovenous malformation;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED3 system_category Nervous life_stage Adult, Child track_name Nott_2019 PU.1+ Microglia Histone ChIP-seq H3K27ac peaks (bed3-lifted) [Life stage: Adult, Child] [Histone ChIP-seq peaks]
H3K27ac • Oligodendrocyte NGBEPELDE7AUCBD4 • Nott 201931727856 Super-enhancer Oligodendrocyte Enhancer Show metadata Download track Track metadata identifier NGBEPELDE7AUCBD4 data_source Nott_2019 Download track Download number_of_intervals 1,152 bp_covered 76,371,866 output_type super-enhancer peaks genome_build hg38 cell_type Oligodendrocyte biosample_type Tissue biosample_term_id CL:0000128 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Super-enhancer file_format bed bed6-lifted file_size 29,170 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_OLIG2_superEnhancer_L1_lifted.bed.gz processed_file_md5 3a9ffa8958fb78570266e2cb951eb6c3 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_OLIG2_superEnhancer_L1_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_OLIG2_superEnhancer_L1_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/Super_enhancers/OLIG2_superEnhancer_L1.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/Super_enhancers/OLIG2_superEnhancer_L1.gz raw_file_md5 6d6ef51d95473ed9c6980986c55ecf02 data_category Enhancer Genomic feature type H3K27ac super-enhancer peaks track_description version=2019;Original_cell_type=oligodendrocytes;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 4yo, 18yo;sexes=M;ethnicities=His, Caucasian;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Residual ateriovenous malformation, Negative pathology, Focal cortical dysplasia type Ic;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED6 system_category Nervous life_stage Adult, Child track_name Nott_2019 Oligodendrocyte Super-enhancer H3K27ac-histone-mark super-enhancer peaks (bed6-lifted) [Life stage: Adult, Child] [Enhancer]
H3K27ac • Neuron NGBEPELI5ERYXM7L • Nott 201931727856 Histone ChIP-seq Neuron Histone Show metadata Download track Track metadata identifier NGBEPELI5ERYXM7L data_source Nott_2019 Download track Download number_of_intervals 148,066 bp_covered 157,234,772 output_type peaks genome_build hg38 cell_type Neuron biosample_type Tissue biosample_term_id CL:0000540 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Histone ChIP-seq file_format bed bed3-lifted file_size 2,416,796 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_NeuN_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz processed_file_md5 2b2caaea48f1970d0509c0615c7ad141 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_NeuN_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_NeuN_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/H3K27/NeuN_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/H3K27/NeuN_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz raw_file_md5 67c6c2e06a3fe6497af988d5f0a89200 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac peaks track_description version=2019;Original_cell_type=NeuN_optimal_peak_IDR_ENCODE.H3K27;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=14yo, 18yo, 4yo;sexes=M;ethnicities=Caucasian, His;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Focal cortical dysplasia type Ic, Negative pathology, Residual ateriovenous malformation;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED3 system_category Nervous life_stage Adult, Child track_name Nott_2019 Neuron Histone ChIP-seq H3K27ac peaks (bed3-lifted) [Life stage: Adult, Child] [Histone ChIP-seq peaks]
H3K27ac • Astrocyte NGBEPELKO22X6KHC • Nott 201931727856 Super-enhancer Astrocyte Enhancer Show metadata Download track Track metadata identifier NGBEPELKO22X6KHC data_source Nott_2019 Download track Download number_of_intervals 460 bp_covered 40,754,317 output_type super-enhancer peaks genome_build hg38 cell_type Astrocyte biosample_type Tissue biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Super-enhancer file_format bed bed6-lifted file_size 12,061 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_LHX2_superEnhancer_L1_lifted.bed.gz processed_file_md5 1ceed625460a0038575b3fb312a81b7d wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_LHX2_superEnhancer_L1_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_LHX2_superEnhancer_L1_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/Super_enhancers/LHX2_superEnhancer_L1.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/Super_enhancers/LHX2_superEnhancer_L1.gz raw_file_md5 8e0635a999a1fee313d4e48646a9dddc data_category Enhancer Genomic feature type H3K27ac super-enhancer peaks track_description version=2019;Original_cell_type=astrocyte;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 12yo, 4yo;sexes=M;ethnicities=HIs, His, Caucasian;brain_regions=Temporal Cortex, Frontal Cortex;pathologies_dx=Negative pathology, Cystic encephalomalacia , Focal cortical dysplasia type Ic;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED6 system_category Nervous life_stage Child track_name Nott_2019 Astrocyte Super-enhancer H3K27ac-histone-mark super-enhancer peaks (bed6-lifted) [Life stage: Child] [Enhancer]
H3K27ac • Oligodendrocyte NGBEPELKVRL7TVOO • Nott 201931727856 Histone ChIP-seq Oligodendrocyte Histone Show metadata Download track Track metadata identifier NGBEPELKVRL7TVOO data_source Nott_2019 Download track Download number_of_intervals 73,122 bp_covered 106,184,364 output_type peaks genome_build hg38 cell_type Oligodendrocyte biosample_type Tissue biosample_term_id CL:0000128 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Histone ChIP-seq file_format bed bed3-lifted file_size 1,220,856 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_Olig2_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz processed_file_md5 e02c0ff47978f0df61e6b214f0d8c075 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_Olig2_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_Olig2_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/H3K27/Olig2_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/H3K27/Olig2_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz raw_file_md5 47dcef5d7d90621cea37887ec9b62bb8 data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac peaks track_description version=2019;Original_cell_type=Olig2_optimal_peak_IDR_ENCODE.H3K27;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=14yo, 18yo, 4yo;sexes=M;ethnicities=Caucasian, His;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Focal cortical dysplasia type Ic, Negative pathology, Residual ateriovenous malformation;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED3 system_category Nervous life_stage Adult, Child track_name Nott_2019 Oligodendrocyte Histone ChIP-seq H3K27ac peaks (bed3-lifted) [Life stage: Adult, Child] [Histone ChIP-seq peaks]
H3K27ac • Oligodendrocyte NGBEPELLKCUVYQSF • Nott 201931727856 Enhancer Oligodendrocyte Enhancer Show metadata Download track Track metadata identifier NGBEPELLKCUVYQSF data_source Nott_2019 Download track Download number_of_intervals 66,626 bp_covered 80,769,948 output_type enhancer peaks genome_build hg38 cell_type Oligodendrocyte biosample_type Tissue biosample_term_id CL:0000128 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Enhancer file_format bed bed3-lifted file_size 1,103,602 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_Olig_enhancers_lifted.bed.gz processed_file_md5 f50a9bd858ae376d3c86439a26ea17bd wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_Olig_enhancers_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_Olig_enhancers_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/enhancers/Olig2_enhancers.sorted.bigBed -P FILER2/Annotationtracks/Downloads/Nott_2019/enhancers/Olig2_enhancers.sorted.bigBed raw_file_md5 b8ac27702659800eef5ae21725412556 data_category Enhancer Genomic feature type H3K27ac enhancer peaks track_description version=2019;Original_cell_type=oligodendrocytes;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 4yo, 18yo;sexes=M;ethnicities=His, Caucasian;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Residual ateriovenous malformation, Negative pathology, Focal cortical dysplasia type Ic;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED3 system_category Nervous life_stage Adult, Child track_name Nott_2019 Oligodendrocyte Enhancer H3K27ac-histone-mark enhancer peaks (bed3-lifted) [Life stage: Adult, Child] [Enhancer]
H3K27ac • Astrocyte NGBEPELPRTGXPUEM • Nott 201931727856 Histone ChIP-seq Astrocyte Histone Show metadata Download track Track metadata identifier NGBEPELPRTGXPUEM data_source Nott_2019 Download track Download number_of_intervals 70,902 bp_covered 92,528,824 output_type peaks genome_build hg38 cell_type Astrocyte biosample_type Tissue biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Histone ChIP-seq file_format bed bed3-lifted file_size 1,174,896 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_LHX2_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz processed_file_md5 16d17f95ad4755e6b660faf3576c2946 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_LHX2_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_LHX2_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/H3K27/LHX2_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/H3K27/LHX2_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz raw_file_md5 0176dc7dea4e18131e9b56a9c475050b data_category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac peaks track_description version=2019;Original_cell_type=LHX2_optimal_peak_IDR_ENCODE.H3K27;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=12yo, 14yo, 4yo;sexes=M;ethnicities=Caucasian, HIs, His;brain_regions=Frontal Cortex, Temporal Cortex;pathologies_dx=Cystic encephalomalacia , Focal cortical dysplasia type Ic, Negative pathology;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED3 system_category Nervous life_stage Child track_name Nott_2019 Astrocyte Histone ChIP-seq H3K27ac peaks (bed3-lifted) [Life stage: Child] [Histone ChIP-seq peaks]
H3K27ac • PU.1+ Microglia NGBEPELTEX7FTWNU • Nott 201931727856 Super-enhancer PU.1+ Microglia Enhancer Show metadata Download track Track metadata identifier NGBEPELTEX7FTWNU data_source Nott_2019 Download track Download number_of_intervals 627 bp_covered 36,383,399 output_type super-enhancer peaks genome_build hg38 cell_type PU.1+ Microglia biosample_type Tissue biosample_term_id CL:0000129 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Super-enhancer file_format bed bed6-lifted file_size 16,103 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_PU1_superEnhancer_L1_lifted.bed.gz processed_file_md5 b092169eb4fb0766f1ebd6df526a7726 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_PU1_superEnhancer_L1_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_PU1_superEnhancer_L1_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/Super_enhancers/PU1_superEnhancer_L1.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/Super_enhancers/PU1_superEnhancer_L1.gz raw_file_md5 b7f0d422ddeea5e5a8b5df151d9f4e21 data_category Enhancer Genomic feature type H3K27ac super-enhancer peaks track_description version=2019;Original_cell_type=microglia;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 4yo, 18yo;sexes=M;ethnicities=His, Caucasian;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Residual ateriovenous malformation, Negative pathology, Focal cortical dysplasia type Ic;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED6 system_category Nervous life_stage Adult, Child track_name Nott_2019 PU.1+ Microglia Super-enhancer H3K27ac-histone-mark super-enhancer peaks (bed6-lifted) [Life stage: Adult, Child] [Enhancer]
H3K27ac • Astrocyte NGBEPELXRUBJ5PEB • Nott 201931727856 Enhancer Astrocyte Enhancer Show metadata Download track Track metadata identifier NGBEPELXRUBJ5PEB data_source Nott_2019 Download track Download number_of_intervals 63,793 bp_covered 68,540,614 output_type enhancer peaks genome_build hg38 cell_type Astrocyte biosample_type Tissue biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody H3K27ac assay Enhancer file_format bed bed3-lifted file_size 1,048,902 downloaded_date 10/02/2020 release_date 02/04/2020 date_added_to_filer 12/03/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_LHX2_enhancers_lifted.bed.gz processed_file_md5 eecea1fad502c7be39819a055c0937af wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_LHX2_enhancers_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_LHX2_enhancers_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/ link_out_url https://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nott_2019/enhancers/LHX2_enhancers.sorted.bigBed -P FILER2/Annotationtracks/Downloads/Nott_2019/enhancers/LHX2_enhancers.sorted.bigBed raw_file_md5 33f70e542485065ce46412039fef9f69 data_category Enhancer Genomic feature type H3K27ac enhancer peaks track_description version=2019;Original_cell_type=astrocyte;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 12yo, 4yo;sexes=M;ethnicities=HIs, His, Caucasian;brain_regions=Temporal Cortex, Frontal Cortex;pathologies_dx=Negative pathology, Cystic encephalomalacia , Focal cortical dysplasia type Ic;dataSource_pubmed_id=31727856;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Nott_2019.html;original_biosample_term_id=Not available;is_hg38_lifted=yes;schema=BED3 system_category Nervous life_stage Child track_name Nott_2019 Astrocyte Enhancer H3K27ac-histone-mark enhancer peaks (bed3-lifted) [Life stage: Child] [Enhancer]
H3K27ac • Dendritic cell NGBLP22HOI5MVP • Blueprint27863956 ChIP-seq Dendritic cell Histone Show metadata Download track Track metadata identifier NGBLP22HOI5MVP data_source Blueprint Download track Download number_of_intervals 85,254 bp_covered 46,570,949 output_type peaks genome_build hg38 cell_type Dendritic cell biosample_type Primary cell biosample_term_id CL:0000451 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K27ac assay ChIP-seq file_format bed bed6 file_size 1,115,354 downloaded_date 03/12/2021 release_date 08/31/2016 date_added_to_filer 01/19/2023 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/58488.Blueprint.ERS1044647.H3K27ac.peak_calls.bed.gz processed_file_md5 7cb9299b13f028cc93d44bffaa1cb682 wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/58488.Blueprint.ERS1044647.H3K27ac.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/58488.Blueprint.ERS1044647.H3K27ac.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/Blueprint/hg38/58488.Blueprint.ERS1044647.H3K27ac.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/Blueprint/58488.Blueprint.ERS1044647.H3K27ac.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ raw_file_md5 a9bc8cd13ed826ec2d3851fefd41aa8e data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K27ac peaks track_description version=build 2020-10;Original_cell_type=Mature conventional dendritic cell;ID=ERS1044647;disease=Healthy;donor_id=B270;donor_age=45-50;donor_sex=Male;sample_ontology=https://purl.obolibrary.org/obo/CL_0000841;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Blueprint.html;original_biosample_term_id=CL_0000841;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Blueprint Dendritic cell ChIP-seq H3K27ac-histone-mark peaks (bed6) [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Peripheral mononucleated cell NGBLP22U5BMHOA • Blueprint27863956 ChIP-seq Peripheral mononucleated cell Histone Show metadata Download track Track metadata identifier NGBLP22U5BMHOA data_source Blueprint Download track Download number_of_intervals 123,478 bp_covered 65,239,996 output_type peaks genome_build hg38 cell_type Peripheral mononucleated cell biosample_type Primary cell biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K27ac assay ChIP-seq file_format bed bed6 file_size 1,547,826 downloaded_date 03/12/2021 release_date 08/31/2016 date_added_to_filer 01/19/2023 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/62573.Blueprint.ERS699840.H3K27ac.peak_calls.bed.gz processed_file_md5 b50e559d5c211877e529c6552f1d98e9 wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/62573.Blueprint.ERS699840.H3K27ac.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/62573.Blueprint.ERS699840.H3K27ac.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/Blueprint/hg38/62573.Blueprint.ERS699840.H3K27ac.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/Blueprint/62573.Blueprint.ERS699840.H3K27ac.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ raw_file_md5 a5f1f835713b4b0fb3b5b9adba20a663 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K27ac peaks track_description version=build 2020-10;Original_cell_type=Peripheral blood mononuclear cell;ID=ERS699840;disease=Acute Myeloid Leukemia;donor_id=UMCG00025;donor_age=20-25;donor_sex=Male;sample_ontology=https://purl.obolibrary.org/obo/CL_2000001;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Blueprint.html;original_biosample_term_id=CL_2000001;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Blueprint Peripheral mononucleated cell ChIP-seq H3K27ac-histone-mark peaks (bed6) [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Lymph node NGBLP23ICFIDUF • Blueprint27863956 ChIP-seq Lymph node Histone Show metadata Download track Track metadata identifier NGBLP23ICFIDUF data_source Blueprint Download track Download number_of_intervals 42,551 bp_covered 37,433,043 output_type peaks genome_build hg38 cell_type Lymph node biosample_type Primary tissue biosample_term_id UBERON:0000029 tissue_category Immune Organ encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K27ac assay ChIP-seq file_format bed bed6 file_size 570,977 downloaded_date 03/12/2021 release_date 08/31/2016 date_added_to_filer 01/19/2023 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/57480.Blueprint.ERS886070.H3K27ac.peak_calls.bed.gz processed_file_md5 eee4a8ab2beab7e986cb723bcac70e43 wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/57480.Blueprint.ERS886070.H3K27ac.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/57480.Blueprint.ERS886070.H3K27ac.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/Blueprint/hg38/57480.Blueprint.ERS886070.H3K27ac.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/Blueprint/57480.Blueprint.ERS886070.H3K27ac.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ raw_file_md5 d2e034b4b9f4efec54d16b626d5d0c9c data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K27ac peaks track_description version=build 2020-10;Original_cell_type=Lymph node;ID=ERS886070;disease=Lymphoma_Follicular;donor_id=FL Grad 1_2_1;donor_age=70-75;donor_sex=Male;sample_ontology=https://purl.obolibrary.org/obo/UBERON_0000029;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Blueprint.html;original_biosample_term_id=UBERON_0000029;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Blueprint Lymph node ChIP-seq H3K27ac-histone-mark peaks (bed6) [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Myeloid cell NGBLP27RNLAK5B • Blueprint27863956 ChIP-seq Myeloid cell Histone Show metadata Download track Track metadata identifier NGBLP27RNLAK5B data_source Blueprint Download track Download number_of_intervals 146,475 bp_covered 119,391,385 output_type peaks genome_build hg38 cell_type Myeloid cell biosample_type Primary cell biosample_term_id CL:0000763 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K27ac assay ChIP-seq file_format bed bed6 file_size 1,872,243 downloaded_date 03/12/2021 release_date 08/31/2016 date_added_to_filer 01/19/2023 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/62097.Blueprint.ERS655114.H3K27ac.peak_calls.bed.gz processed_file_md5 1c4d9edafa05250d270f82c95dde8871 wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/62097.Blueprint.ERS655114.H3K27ac.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/62097.Blueprint.ERS655114.H3K27ac.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/Blueprint/hg38/62097.Blueprint.ERS655114.H3K27ac.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/Blueprint/62097.Blueprint.ERS655114.H3K27ac.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ raw_file_md5 e9c588d8aad3a19c03d8ba6e0eaffc43 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K27ac peaks track_description version=build 2020-10;Original_cell_type=Myeloid cell;ID=ERS655114;disease=Acute Myeloid Leukemia;donor_id=pz 298;donor_age=75-80;donor_sex=Male;sample_ontology=https://purl.obolibrary.org/obo/CL_0000763;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Blueprint.html;original_biosample_term_id=CL_0000763;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Blueprint Myeloid cell ChIP-seq H3K27ac-histone-mark peaks (bed6) [Life stage: Adult] [Histone ChIP-seq peaks]
H3K27ac • Monocyte NGBLP2AWLV25GB • Blueprint27863956 ChIP-seq Monocyte Histone Show metadata Download track Track metadata identifier NGBLP2AWLV25GB data_source Blueprint Download track Download number_of_intervals 78,531 bp_covered 45,787,331 output_type peaks genome_build hg38 cell_type Monocyte biosample_type Primary cell biosample_term_id CL:0000576 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody H3K27ac assay ChIP-seq file_format bed bed6 file_size 1,033,137 downloaded_date 03/12/2021 release_date 08/31/2016 date_added_to_filer 01/19/2023 processed_file_download_url https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/59143.Blueprint.ERS1044029.H3K27ac.peak_calls.bed.gz processed_file_md5 02fa449b2a92c2fd91bcb83e2d29d9ce wget_command wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/59143.Blueprint.ERS1044029.H3K27ac.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/59143.Blueprint.ERS1044029.H3K27ac.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ link_out_url https://ihec-epigenomes.org/ raw_file_url https://epigenomesportal.ca/tracks/Blueprint/hg38/59143.Blueprint.ERS1044029.H3K27ac.peak_calls.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/IHEC/Blueprint/59143.Blueprint.ERS1044029.H3K27ac.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ raw_file_md5 e1f35f5e57645217365bb02be21132e1 data_category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K27ac peaks track_description version=build 2020-10;Original_cell_type=Monocyte;ID=ERS1044029;disease=Healthy;donor_id=SANQUIN_mono_61;donor_age=50-55;donor_sex=Male;sample_ontology=https://purl.obolibrary.org/obo/CL_0000576;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Blueprint.html;original_biosample_term_id=CL_0000576;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Blueprint Monocyte ChIP-seq H3K27ac-histone-mark peaks (bed6) [Life stage: Adult] [Histone ChIP-seq peaks]